Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24005 | 3' | -52.4 | NC_005262.1 | + | 61217 | 0.66 | 0.9188 |
Target: 5'- uGCG-CCAgcgcgucGUACACCgUCCCcuUCGucGCCc -3' miRNA: 3'- -CGCuGGU-------CAUGUGG-AGGG--AGCuuUGG- -5' |
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24005 | 3' | -52.4 | NC_005262.1 | + | 28100 | 0.66 | 0.906752 |
Target: 5'- --uGCCGGUACAUCUUCCgcgUGAagugggucGACCu -3' miRNA: 3'- cgcUGGUCAUGUGGAGGGa--GCU--------UUGG- -5' |
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24005 | 3' | -52.4 | NC_005262.1 | + | 39417 | 0.66 | 0.913215 |
Target: 5'- -gGAUCGGUAUggggcgGCCUgCUCUCGGAuuACCu -3' miRNA: 3'- cgCUGGUCAUG------UGGA-GGGAGCUU--UGG- -5' |
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24005 | 3' | -52.4 | NC_005262.1 | + | 47155 | 0.66 | 0.913215 |
Target: 5'- cGCGACCGGcgaggcgcGCACCacuUUCgUCGAcaagAACCa -3' miRNA: 3'- -CGCUGGUCa-------UGUGG---AGGgAGCU----UUGG- -5' |
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24005 | 3' | -52.4 | NC_005262.1 | + | 6309 | 0.66 | 0.919407 |
Target: 5'- uGCGcucGCCGGc-CGCCUCUCgUCGgcGCCc -3' miRNA: 3'- -CGC---UGGUCauGUGGAGGG-AGCuuUGG- -5' |
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24005 | 3' | -52.4 | NC_005262.1 | + | 14019 | 0.66 | 0.919407 |
Target: 5'- aGCGugCAGU-CGCUUggcggaCCCUgGAcGCCc -3' miRNA: 3'- -CGCugGUCAuGUGGA------GGGAgCUuUGG- -5' |
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24005 | 3' | -52.4 | NC_005262.1 | + | 60485 | 0.66 | 0.919407 |
Target: 5'- cGCGAUCAGggcgagACGCCgggCCgCgcggCGcAGGCCg -3' miRNA: 3'- -CGCUGGUCa-----UGUGGa--GG-Ga---GC-UUUGG- -5' |
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24005 | 3' | -52.4 | NC_005262.1 | + | 12936 | 0.66 | 0.919407 |
Target: 5'- cGCGAagcUCGGcacgACGgUUCCCgCGAGGCCg -3' miRNA: 3'- -CGCU---GGUCa---UGUgGAGGGaGCUUUGG- -5' |
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24005 | 3' | -52.4 | NC_005262.1 | + | 19432 | 0.66 | 0.919407 |
Target: 5'- uGUGugCAGUACAUCgaagagcagugCCUcCGAGACa -3' miRNA: 3'- -CGCugGUCAUGUGGa----------GGGaGCUUUGg -5' |
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24005 | 3' | -52.4 | NC_005262.1 | + | 61493 | 0.66 | 0.893017 |
Target: 5'- cGCGGCCGGaACAgucggaaaugaUCUCgCUCGAccggauGACCc -3' miRNA: 3'- -CGCUGGUCaUGU-----------GGAGgGAGCU------UUGG- -5' |
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24005 | 3' | -52.4 | NC_005262.1 | + | 28770 | 0.66 | 0.919407 |
Target: 5'- uCGACC---GCGCCUUCCUCcaucaGGACCu -3' miRNA: 3'- cGCUGGucaUGUGGAGGGAGc----UUUGG- -5' |
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24005 | 3' | -52.4 | NC_005262.1 | + | 42233 | 0.66 | 0.895849 |
Target: 5'- cGCGACCGGgcccgGCGCCgcguagaccggcuuaUCCC---AAGCCa -3' miRNA: 3'- -CGCUGGUCa----UGUGG---------------AGGGagcUUUGG- -5' |
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24005 | 3' | -52.4 | NC_005262.1 | + | 54505 | 0.66 | 0.915725 |
Target: 5'- gGCGGCC--UGCGCCUCCg-CGAGcuugcgcacgacguuGCCc -3' miRNA: 3'- -CGCUGGucAUGUGGAGGgaGCUU---------------UGG- -5' |
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24005 | 3' | -52.4 | NC_005262.1 | + | 33360 | 0.66 | 0.913215 |
Target: 5'- cGCGAUgCGGUACGCCUCgCggaUCGAcaggaAGCg -3' miRNA: 3'- -CGCUG-GUCAUGUGGAGgG---AGCU-----UUGg -5' |
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24005 | 3' | -52.4 | NC_005262.1 | + | 14038 | 0.66 | 0.913215 |
Target: 5'- uGCGACCAGcggcuCAUCUUCUcCGGcaAGCCc -3' miRNA: 3'- -CGCUGGUCau---GUGGAGGGaGCU--UUGG- -5' |
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24005 | 3' | -52.4 | NC_005262.1 | + | 56819 | 0.66 | 0.913215 |
Target: 5'- gGCGGCCAuGUcgaACGCCgacgCCUCGGAcacguCCu -3' miRNA: 3'- -CGCUGGU-CA---UGUGGag--GGAGCUUu----GG- -5' |
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24005 | 3' | -52.4 | NC_005262.1 | + | 26882 | 0.66 | 0.906752 |
Target: 5'- -aGGCCGG-GCGCCUCaagCGAAuccGCCa -3' miRNA: 3'- cgCUGGUCaUGUGGAGggaGCUU---UGG- -5' |
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24005 | 3' | -52.4 | NC_005262.1 | + | 21432 | 0.66 | 0.900018 |
Target: 5'- cGCGGCC--UugGCCg-CCUCGAucGCCu -3' miRNA: 3'- -CGCUGGucAugUGGagGGAGCUu-UGG- -5' |
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24005 | 3' | -52.4 | NC_005262.1 | + | 5274 | 0.66 | 0.900018 |
Target: 5'- cGCG-CCGGccGCGCCcgcgCCCgCGAcGCCg -3' miRNA: 3'- -CGCuGGUCa-UGUGGa---GGGaGCUuUGG- -5' |
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24005 | 3' | -52.4 | NC_005262.1 | + | 11099 | 0.66 | 0.900018 |
Target: 5'- cGCGA-CAGc-CGCCUCgCUCGucAGCCg -3' miRNA: 3'- -CGCUgGUCauGUGGAGgGAGCu-UUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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