miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24005 3' -52.4 NC_005262.1 + 22626 1.14 0.001251
Target:  5'- gGCGACCAGUACACCUCCCUCGAAACCu -3'
miRNA:   3'- -CGCUGGUCAUGUGGAGGGAGCUUUGG- -5'
24005 3' -52.4 NC_005262.1 + 33744 0.74 0.512982
Target:  5'- gGCGACCAGcgagGCGCgCUCgucagCCUCGGAcACCu -3'
miRNA:   3'- -CGCUGGUCa---UGUG-GAG-----GGAGCUU-UGG- -5'
24005 3' -52.4 NC_005262.1 + 22678 0.73 0.544704
Target:  5'- cGCgGACCAGUGCGCagacgCgCCUCGAccGCCu -3'
miRNA:   3'- -CG-CUGGUCAUGUGga---G-GGAGCUu-UGG- -5'
24005 3' -52.4 NC_005262.1 + 13939 0.73 0.566202
Target:  5'- aCGGCCGGUGCugCgCCaUCGAGucGCCg -3'
miRNA:   3'- cGCUGGUCAUGugGaGGgAGCUU--UGG- -5'
24005 3' -52.4 NC_005262.1 + 50038 0.72 0.60977
Target:  5'- cCGAgCCGGcgccgGCugCUCCCgagaCGAAGCCg -3'
miRNA:   3'- cGCU-GGUCa----UGugGAGGGa---GCUUUGG- -5'
24005 3' -52.4 NC_005262.1 + 53328 0.71 0.65364
Target:  5'- aGCGACCGcGcGCGCCgcuaCCUCGccGACCg -3'
miRNA:   3'- -CGCUGGU-CaUGUGGag--GGAGCu-UUGG- -5'
24005 3' -52.4 NC_005262.1 + 2750 0.71 0.664583
Target:  5'- gGCGGCCAGgACGCCg-CC-CGgcGCCg -3'
miRNA:   3'- -CGCUGGUCaUGUGGagGGaGCuuUGG- -5'
24005 3' -52.4 NC_005262.1 + 56036 0.71 0.664583
Target:  5'- cGUGACCAugaucugacGgcCGCCgCCCUCGAucGCCg -3'
miRNA:   3'- -CGCUGGU---------CauGUGGaGGGAGCUu-UGG- -5'
24005 3' -52.4 NC_005262.1 + 48707 0.7 0.686368
Target:  5'- aGCGGCCGG-GCuCCUCCUcgUCGAGcugcgauugcagGCCg -3'
miRNA:   3'- -CGCUGGUCaUGuGGAGGG--AGCUU------------UGG- -5'
24005 3' -52.4 NC_005262.1 + 42455 0.7 0.697189
Target:  5'- gGCcuGCCAGUuCACCUCgUUCGAGAUg -3'
miRNA:   3'- -CGc-UGGUCAuGUGGAGgGAGCUUUGg -5'
24005 3' -52.4 NC_005262.1 + 23037 0.7 0.707946
Target:  5'- -aGugCAGcaucACGCCUCCCUCGcgcgGAGCa -3'
miRNA:   3'- cgCugGUCa---UGUGGAGGGAGC----UUUGg -5'
24005 3' -52.4 NC_005262.1 + 56413 0.7 0.712229
Target:  5'- uCGACCAGacgcuuuucgauccACGCCUUCaugUCGAAGCCg -3'
miRNA:   3'- cGCUGGUCa-------------UGUGGAGGg--AGCUUUGG- -5'
24005 3' -52.4 NC_005262.1 + 25018 0.7 0.718631
Target:  5'- cGCGGCCAuGUGCGCaUCCCgccauGCCu -3'
miRNA:   3'- -CGCUGGU-CAUGUGgAGGGagcuuUGG- -5'
24005 3' -52.4 NC_005262.1 + 58983 0.7 0.728174
Target:  5'- gGCGGCCuc-ACGCCUCCCgcgccgucgcgcuUCGAccgucugcaAGCCg -3'
miRNA:   3'- -CGCUGGucaUGUGGAGGG-------------AGCU---------UUGG- -5'
24005 3' -52.4 NC_005262.1 + 18244 0.7 0.739732
Target:  5'- cGCGAUCAGgcggGCACgcgCUCCCggUUGAGGCg -3'
miRNA:   3'- -CGCUGGUCa---UGUG---GAGGG--AGCUUUGg -5'
24005 3' -52.4 NC_005262.1 + 8360 0.7 0.739732
Target:  5'- aGCGACgCGG-GCAgCUUCCUCG--GCCg -3'
miRNA:   3'- -CGCUG-GUCaUGUgGAGGGAGCuuUGG- -5'
24005 3' -52.4 NC_005262.1 + 30481 0.69 0.74702
Target:  5'- cGCGGCUcgugcuguacucggGGUGCGCCUUgCUCGugaagucguuGACCu -3'
miRNA:   3'- -CGCUGG--------------UCAUGUGGAGgGAGCu---------UUGG- -5'
24005 3' -52.4 NC_005262.1 + 18381 0.69 0.760402
Target:  5'- aGCGaACCGGcGCGCCUaCC-CGAAACg -3'
miRNA:   3'- -CGC-UGGUCaUGUGGAgGGaGCUUUGg -5'
24005 3' -52.4 NC_005262.1 + 57625 0.69 0.767518
Target:  5'- cGUGACCGGUACgACCUgaucgcggucgaugCCCggcgCGAcGCUg -3'
miRNA:   3'- -CGCUGGUCAUG-UGGA--------------GGGa---GCUuUGG- -5'
24005 3' -52.4 NC_005262.1 + 3914 0.69 0.770546
Target:  5'- cGCG-CgGGgcgcucgGCACCUUCCUCcGGGCCg -3'
miRNA:   3'- -CGCuGgUCa------UGUGGAGGGAGcUUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.