miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24005 3' -52.4 NC_005262.1 + 11968 0.66 0.893017
Target:  5'- cGCGGCCAccuuucgcgcGaUACACgUCgCCgacagCGggGCCg -3'
miRNA:   3'- -CGCUGGU----------C-AUGUGgAG-GGa----GCuuUGG- -5'
24005 3' -52.4 NC_005262.1 + 53096 0.66 0.885754
Target:  5'- cGCGGCCAugcuGUcggGCAUCagcCCCUUGAAcagGCCg -3'
miRNA:   3'- -CGCUGGU----CA---UGUGGa--GGGAGCUU---UGG- -5'
24005 3' -52.4 NC_005262.1 + 45786 0.66 0.885754
Target:  5'- aCGGCCGGcu-GCCggCCCUCGAuGCg -3'
miRNA:   3'- cGCUGGUCaugUGGa-GGGAGCUuUGg -5'
24005 3' -52.4 NC_005262.1 + 16950 0.66 0.88427
Target:  5'- cGCGGCCGG-GCGCCUgCaucaguugaugaUCGAaccGACCu -3'
miRNA:   3'- -CGCUGGUCaUGUGGAgGg-----------AGCU---UUGG- -5'
24005 3' -52.4 NC_005262.1 + 29538 0.67 0.878232
Target:  5'- gGCGACC--UGCGCCUCugccgcagCCUUGcGGGCCu -3'
miRNA:   3'- -CGCUGGucAUGUGGAG--------GGAGC-UUUGG- -5'
24005 3' -52.4 NC_005262.1 + 24246 0.67 0.878232
Target:  5'- aCGugCAggcGUGCGCCUCcugccgcccauCCUCGAAcgucACCc -3'
miRNA:   3'- cGCugGU---CAUGUGGAG-----------GGAGCUU----UGG- -5'
24005 3' -52.4 NC_005262.1 + 42373 0.67 0.870459
Target:  5'- cGCGagaacacgucGCCGGUGC-CCgugCCgCUCGucGCCg -3'
miRNA:   3'- -CGC----------UGGUCAUGuGGa--GG-GAGCuuUGG- -5'
24005 3' -52.4 NC_005262.1 + 48061 0.67 0.86244
Target:  5'- cGCG-UCGGUcGCACCUgCCgCGAcgAGCCg -3'
miRNA:   3'- -CGCuGGUCA-UGUGGAgGGaGCU--UUGG- -5'
24005 3' -52.4 NC_005262.1 + 43850 0.67 0.86244
Target:  5'- cGCGG-CGGUGCGCCggcaggaCCUCGGcgcGAUCg -3'
miRNA:   3'- -CGCUgGUCAUGUGGag-----GGAGCU---UUGG- -5'
24005 3' -52.4 NC_005262.1 + 53783 0.67 0.85834
Target:  5'- cGCGGCCGGguucugcGCGCCcggcugauagaugCCCUCGGGcagguuggcgaucGCCu -3'
miRNA:   3'- -CGCUGGUCa------UGUGGa------------GGGAGCUU-------------UGG- -5'
24005 3' -52.4 NC_005262.1 + 35251 0.68 0.836097
Target:  5'- aGCGGCUGG-GCGCC-CCCggCGAacggcacGACCa -3'
miRNA:   3'- -CGCUGGUCaUGUGGaGGGa-GCU-------UUGG- -5'
24005 3' -52.4 NC_005262.1 + 42504 0.68 0.809596
Target:  5'- uGCGGCCGGcugGCGCCgCCUga-AAGCCg -3'
miRNA:   3'- -CGCUGGUCa--UGUGGaGGGagcUUUGG- -5'
24005 3' -52.4 NC_005262.1 + 30886 0.68 0.809596
Target:  5'- aGCGGCCGGauggugACGCCgcucgCgCUCGAGgauggcACCa -3'
miRNA:   3'- -CGCUGGUCa-----UGUGGa----GgGAGCUU------UGG- -5'
24005 3' -52.4 NC_005262.1 + 27409 0.68 0.808654
Target:  5'- gGCGACgGGcgaACGCgCUCCgUCGAgauucuuGACCa -3'
miRNA:   3'- -CGCUGgUCa--UGUG-GAGGgAGCU-------UUGG- -5'
24005 3' -52.4 NC_005262.1 + 9220 0.68 0.800085
Target:  5'- cCGACCGGcccgGCGCCggUCCUCauAGCCg -3'
miRNA:   3'- cGCUGGUCa---UGUGGa-GGGAGcuUUGG- -5'
24005 3' -52.4 NC_005262.1 + 45036 0.69 0.790399
Target:  5'- gGCGGCCAu--CugCUCCugacgCUCGggGCUg -3'
miRNA:   3'- -CGCUGGUcauGugGAGG-----GAGCuuUGG- -5'
24005 3' -52.4 NC_005262.1 + 3914 0.69 0.770546
Target:  5'- cGCG-CgGGgcgcucgGCACCUUCCUCcGGGCCg -3'
miRNA:   3'- -CGCuGgUCa------UGUGGAGGGAGcUUUGG- -5'
24005 3' -52.4 NC_005262.1 + 23845 0.69 0.770546
Target:  5'- -aGGCCGGcACGCCgCCCUUGccgguGCCg -3'
miRNA:   3'- cgCUGGUCaUGUGGaGGGAGCuu---UGG- -5'
24005 3' -52.4 NC_005262.1 + 57625 0.69 0.767518
Target:  5'- cGUGACCGGUACgACCUgaucgcggucgaugCCCggcgCGAcGCUg -3'
miRNA:   3'- -CGCUGGUCAUG-UGGA--------------GGGa---GCUuUGG- -5'
24005 3' -52.4 NC_005262.1 + 18381 0.69 0.760402
Target:  5'- aGCGaACCGGcGCGCCUaCC-CGAAACg -3'
miRNA:   3'- -CGC-UGGUCaUGUGGAgGGaGCUUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.