miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24005 3' -52.4 NC_005262.1 + 23845 0.69 0.770546
Target:  5'- -aGGCCGGcACGCCgCCCUUGccgguGCCg -3'
miRNA:   3'- cgCUGGUCaUGUGGaGGGAGCuu---UGG- -5'
24005 3' -52.4 NC_005262.1 + 24246 0.67 0.878232
Target:  5'- aCGugCAggcGUGCGCCUCcugccgcccauCCUCGAAcgucACCc -3'
miRNA:   3'- cGCugGU---CAUGUGGAG-----------GGAGCUU----UGG- -5'
24005 3' -52.4 NC_005262.1 + 25018 0.7 0.718631
Target:  5'- cGCGGCCAuGUGCGCaUCCCgccauGCCu -3'
miRNA:   3'- -CGCUGGU-CAUGUGgAGGGagcuuUGG- -5'
24005 3' -52.4 NC_005262.1 + 26882 0.66 0.906752
Target:  5'- -aGGCCGG-GCGCCUCaagCGAAuccGCCa -3'
miRNA:   3'- cgCUGGUCaUGUGGAGggaGCUU---UGG- -5'
24005 3' -52.4 NC_005262.1 + 27409 0.68 0.808654
Target:  5'- gGCGACgGGcgaACGCgCUCCgUCGAgauucuuGACCa -3'
miRNA:   3'- -CGCUGgUCa--UGUG-GAGGgAGCU-------UUGG- -5'
24005 3' -52.4 NC_005262.1 + 28100 0.66 0.906752
Target:  5'- --uGCCGGUACAUCUUCCgcgUGAagugggucGACCu -3'
miRNA:   3'- cgcUGGUCAUGUGGAGGGa--GCU--------UUGG- -5'
24005 3' -52.4 NC_005262.1 + 28770 0.66 0.919407
Target:  5'- uCGACC---GCGCCUUCCUCcaucaGGACCu -3'
miRNA:   3'- cGCUGGucaUGUGGAGGGAGc----UUUGG- -5'
24005 3' -52.4 NC_005262.1 + 29538 0.67 0.878232
Target:  5'- gGCGACC--UGCGCCUCugccgcagCCUUGcGGGCCu -3'
miRNA:   3'- -CGCUGGucAUGUGGAG--------GGAGC-UUUGG- -5'
24005 3' -52.4 NC_005262.1 + 30481 0.69 0.74702
Target:  5'- cGCGGCUcgugcuguacucggGGUGCGCCUUgCUCGugaagucguuGACCu -3'
miRNA:   3'- -CGCUGG--------------UCAUGUGGAGgGAGCu---------UUGG- -5'
24005 3' -52.4 NC_005262.1 + 30886 0.68 0.809596
Target:  5'- aGCGGCCGGauggugACGCCgcucgCgCUCGAGgauggcACCa -3'
miRNA:   3'- -CGCUGGUCa-----UGUGGa----GgGAGCUU------UGG- -5'
24005 3' -52.4 NC_005262.1 + 33360 0.66 0.913215
Target:  5'- cGCGAUgCGGUACGCCUCgCggaUCGAcaggaAGCg -3'
miRNA:   3'- -CGCUG-GUCAUGUGGAGgG---AGCU-----UUGg -5'
24005 3' -52.4 NC_005262.1 + 33744 0.74 0.512982
Target:  5'- gGCGACCAGcgagGCGCgCUCgucagCCUCGGAcACCu -3'
miRNA:   3'- -CGCUGGUCa---UGUG-GAG-----GGAGCUU-UGG- -5'
24005 3' -52.4 NC_005262.1 + 35251 0.68 0.836097
Target:  5'- aGCGGCUGG-GCGCC-CCCggCGAacggcacGACCa -3'
miRNA:   3'- -CGCUGGUCaUGUGGaGGGa-GCU-------UUGG- -5'
24005 3' -52.4 NC_005262.1 + 39417 0.66 0.913215
Target:  5'- -gGAUCGGUAUggggcgGCCUgCUCUCGGAuuACCu -3'
miRNA:   3'- cgCUGGUCAUG------UGGA-GGGAGCUU--UGG- -5'
24005 3' -52.4 NC_005262.1 + 42233 0.66 0.895849
Target:  5'- cGCGACCGGgcccgGCGCCgcguagaccggcuuaUCCC---AAGCCa -3'
miRNA:   3'- -CGCUGGUCa----UGUGG---------------AGGGagcUUUGG- -5'
24005 3' -52.4 NC_005262.1 + 42373 0.67 0.870459
Target:  5'- cGCGagaacacgucGCCGGUGC-CCgugCCgCUCGucGCCg -3'
miRNA:   3'- -CGC----------UGGUCAUGuGGa--GG-GAGCuuUGG- -5'
24005 3' -52.4 NC_005262.1 + 42455 0.7 0.697189
Target:  5'- gGCcuGCCAGUuCACCUCgUUCGAGAUg -3'
miRNA:   3'- -CGc-UGGUCAuGUGGAGgGAGCUUUGg -5'
24005 3' -52.4 NC_005262.1 + 42504 0.68 0.809596
Target:  5'- uGCGGCCGGcugGCGCCgCCUga-AAGCCg -3'
miRNA:   3'- -CGCUGGUCa--UGUGGaGGGagcUUUGG- -5'
24005 3' -52.4 NC_005262.1 + 43850 0.67 0.86244
Target:  5'- cGCGG-CGGUGCGCCggcaggaCCUCGGcgcGAUCg -3'
miRNA:   3'- -CGCUgGUCAUGUGGag-----GGAGCU---UUGG- -5'
24005 3' -52.4 NC_005262.1 + 45036 0.69 0.790399
Target:  5'- gGCGGCCAu--CugCUCCugacgCUCGggGCUg -3'
miRNA:   3'- -CGCUGGUcauGugGAGG-----GAGCuuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.