miRNA display CGI


Results 41 - 57 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24005 3' -52.4 NC_005262.1 + 45786 0.66 0.885754
Target:  5'- aCGGCCGGcu-GCCggCCCUCGAuGCg -3'
miRNA:   3'- cGCUGGUCaugUGGa-GGGAGCUuUGg -5'
24005 3' -52.4 NC_005262.1 + 47155 0.66 0.913215
Target:  5'- cGCGACCGGcgaggcgcGCACCacuUUCgUCGAcaagAACCa -3'
miRNA:   3'- -CGCUGGUCa-------UGUGG---AGGgAGCU----UUGG- -5'
24005 3' -52.4 NC_005262.1 + 48061 0.67 0.86244
Target:  5'- cGCG-UCGGUcGCACCUgCCgCGAcgAGCCg -3'
miRNA:   3'- -CGCuGGUCA-UGUGGAgGGaGCU--UUGG- -5'
24005 3' -52.4 NC_005262.1 + 48707 0.7 0.686368
Target:  5'- aGCGGCCGG-GCuCCUCCUcgUCGAGcugcgauugcagGCCg -3'
miRNA:   3'- -CGCUGGUCaUGuGGAGGG--AGCUU------------UGG- -5'
24005 3' -52.4 NC_005262.1 + 50038 0.72 0.60977
Target:  5'- cCGAgCCGGcgccgGCugCUCCCgagaCGAAGCCg -3'
miRNA:   3'- cGCU-GGUCa----UGugGAGGGa---GCUUUGG- -5'
24005 3' -52.4 NC_005262.1 + 53096 0.66 0.885754
Target:  5'- cGCGGCCAugcuGUcggGCAUCagcCCCUUGAAcagGCCg -3'
miRNA:   3'- -CGCUGGU----CA---UGUGGa--GGGAGCUU---UGG- -5'
24005 3' -52.4 NC_005262.1 + 53328 0.71 0.65364
Target:  5'- aGCGACCGcGcGCGCCgcuaCCUCGccGACCg -3'
miRNA:   3'- -CGCUGGU-CaUGUGGag--GGAGCu-UUGG- -5'
24005 3' -52.4 NC_005262.1 + 53783 0.67 0.85834
Target:  5'- cGCGGCCGGguucugcGCGCCcggcugauagaugCCCUCGGGcagguuggcgaucGCCu -3'
miRNA:   3'- -CGCUGGUCa------UGUGGa------------GGGAGCUU-------------UGG- -5'
24005 3' -52.4 NC_005262.1 + 54505 0.66 0.915725
Target:  5'- gGCGGCC--UGCGCCUCCg-CGAGcuugcgcacgacguuGCCc -3'
miRNA:   3'- -CGCUGGucAUGUGGAGGgaGCUU---------------UGG- -5'
24005 3' -52.4 NC_005262.1 + 56036 0.71 0.664583
Target:  5'- cGUGACCAugaucugacGgcCGCCgCCCUCGAucGCCg -3'
miRNA:   3'- -CGCUGGU---------CauGUGGaGGGAGCUu-UGG- -5'
24005 3' -52.4 NC_005262.1 + 56413 0.7 0.712229
Target:  5'- uCGACCAGacgcuuuucgauccACGCCUUCaugUCGAAGCCg -3'
miRNA:   3'- cGCUGGUCa-------------UGUGGAGGg--AGCUUUGG- -5'
24005 3' -52.4 NC_005262.1 + 56819 0.66 0.913215
Target:  5'- gGCGGCCAuGUcgaACGCCgacgCCUCGGAcacguCCu -3'
miRNA:   3'- -CGCUGGU-CA---UGUGGag--GGAGCUUu----GG- -5'
24005 3' -52.4 NC_005262.1 + 57625 0.69 0.767518
Target:  5'- cGUGACCGGUACgACCUgaucgcggucgaugCCCggcgCGAcGCUg -3'
miRNA:   3'- -CGCUGGUCAUG-UGGA--------------GGGa---GCUuUGG- -5'
24005 3' -52.4 NC_005262.1 + 58983 0.7 0.728174
Target:  5'- gGCGGCCuc-ACGCCUCCCgcgccgucgcgcuUCGAccgucugcaAGCCg -3'
miRNA:   3'- -CGCUGGucaUGUGGAGGG-------------AGCU---------UUGG- -5'
24005 3' -52.4 NC_005262.1 + 60485 0.66 0.919407
Target:  5'- cGCGAUCAGggcgagACGCCgggCCgCgcggCGcAGGCCg -3'
miRNA:   3'- -CGCUGGUCa-----UGUGGa--GG-Ga---GC-UUUGG- -5'
24005 3' -52.4 NC_005262.1 + 61217 0.66 0.9188
Target:  5'- uGCG-CCAgcgcgucGUACACCgUCCCcuUCGucGCCc -3'
miRNA:   3'- -CGCuGGU-------CAUGUGG-AGGG--AGCuuUGG- -5'
24005 3' -52.4 NC_005262.1 + 61493 0.66 0.893017
Target:  5'- cGCGGCCGGaACAgucggaaaugaUCUCgCUCGAccggauGACCc -3'
miRNA:   3'- -CGCUGGUCaUGU-----------GGAGgGAGCU------UUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.