Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24005 | 3' | -52.4 | NC_005262.1 | + | 61493 | 0.66 | 0.893017 |
Target: 5'- cGCGGCCGGaACAgucggaaaugaUCUCgCUCGAccggauGACCc -3' miRNA: 3'- -CGCUGGUCaUGU-----------GGAGgGAGCU------UUGG- -5' |
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24005 | 3' | -52.4 | NC_005262.1 | + | 61217 | 0.66 | 0.9188 |
Target: 5'- uGCG-CCAgcgcgucGUACACCgUCCCcuUCGucGCCc -3' miRNA: 3'- -CGCuGGU-------CAUGUGG-AGGG--AGCuuUGG- -5' |
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24005 | 3' | -52.4 | NC_005262.1 | + | 60485 | 0.66 | 0.919407 |
Target: 5'- cGCGAUCAGggcgagACGCCgggCCgCgcggCGcAGGCCg -3' miRNA: 3'- -CGCUGGUCa-----UGUGGa--GG-Ga---GC-UUUGG- -5' |
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24005 | 3' | -52.4 | NC_005262.1 | + | 58983 | 0.7 | 0.728174 |
Target: 5'- gGCGGCCuc-ACGCCUCCCgcgccgucgcgcuUCGAccgucugcaAGCCg -3' miRNA: 3'- -CGCUGGucaUGUGGAGGG-------------AGCU---------UUGG- -5' |
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24005 | 3' | -52.4 | NC_005262.1 | + | 57625 | 0.69 | 0.767518 |
Target: 5'- cGUGACCGGUACgACCUgaucgcggucgaugCCCggcgCGAcGCUg -3' miRNA: 3'- -CGCUGGUCAUG-UGGA--------------GGGa---GCUuUGG- -5' |
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24005 | 3' | -52.4 | NC_005262.1 | + | 56819 | 0.66 | 0.913215 |
Target: 5'- gGCGGCCAuGUcgaACGCCgacgCCUCGGAcacguCCu -3' miRNA: 3'- -CGCUGGU-CA---UGUGGag--GGAGCUUu----GG- -5' |
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24005 | 3' | -52.4 | NC_005262.1 | + | 56413 | 0.7 | 0.712229 |
Target: 5'- uCGACCAGacgcuuuucgauccACGCCUUCaugUCGAAGCCg -3' miRNA: 3'- cGCUGGUCa-------------UGUGGAGGg--AGCUUUGG- -5' |
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24005 | 3' | -52.4 | NC_005262.1 | + | 56036 | 0.71 | 0.664583 |
Target: 5'- cGUGACCAugaucugacGgcCGCCgCCCUCGAucGCCg -3' miRNA: 3'- -CGCUGGU---------CauGUGGaGGGAGCUu-UGG- -5' |
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24005 | 3' | -52.4 | NC_005262.1 | + | 54505 | 0.66 | 0.915725 |
Target: 5'- gGCGGCC--UGCGCCUCCg-CGAGcuugcgcacgacguuGCCc -3' miRNA: 3'- -CGCUGGucAUGUGGAGGgaGCUU---------------UGG- -5' |
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24005 | 3' | -52.4 | NC_005262.1 | + | 53783 | 0.67 | 0.85834 |
Target: 5'- cGCGGCCGGguucugcGCGCCcggcugauagaugCCCUCGGGcagguuggcgaucGCCu -3' miRNA: 3'- -CGCUGGUCa------UGUGGa------------GGGAGCUU-------------UGG- -5' |
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24005 | 3' | -52.4 | NC_005262.1 | + | 53328 | 0.71 | 0.65364 |
Target: 5'- aGCGACCGcGcGCGCCgcuaCCUCGccGACCg -3' miRNA: 3'- -CGCUGGU-CaUGUGGag--GGAGCu-UUGG- -5' |
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24005 | 3' | -52.4 | NC_005262.1 | + | 53096 | 0.66 | 0.885754 |
Target: 5'- cGCGGCCAugcuGUcggGCAUCagcCCCUUGAAcagGCCg -3' miRNA: 3'- -CGCUGGU----CA---UGUGGa--GGGAGCUU---UGG- -5' |
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24005 | 3' | -52.4 | NC_005262.1 | + | 50038 | 0.72 | 0.60977 |
Target: 5'- cCGAgCCGGcgccgGCugCUCCCgagaCGAAGCCg -3' miRNA: 3'- cGCU-GGUCa----UGugGAGGGa---GCUUUGG- -5' |
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24005 | 3' | -52.4 | NC_005262.1 | + | 48707 | 0.7 | 0.686368 |
Target: 5'- aGCGGCCGG-GCuCCUCCUcgUCGAGcugcgauugcagGCCg -3' miRNA: 3'- -CGCUGGUCaUGuGGAGGG--AGCUU------------UGG- -5' |
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24005 | 3' | -52.4 | NC_005262.1 | + | 48061 | 0.67 | 0.86244 |
Target: 5'- cGCG-UCGGUcGCACCUgCCgCGAcgAGCCg -3' miRNA: 3'- -CGCuGGUCA-UGUGGAgGGaGCU--UUGG- -5' |
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24005 | 3' | -52.4 | NC_005262.1 | + | 47155 | 0.66 | 0.913215 |
Target: 5'- cGCGACCGGcgaggcgcGCACCacuUUCgUCGAcaagAACCa -3' miRNA: 3'- -CGCUGGUCa-------UGUGG---AGGgAGCU----UUGG- -5' |
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24005 | 3' | -52.4 | NC_005262.1 | + | 45786 | 0.66 | 0.885754 |
Target: 5'- aCGGCCGGcu-GCCggCCCUCGAuGCg -3' miRNA: 3'- cGCUGGUCaugUGGa-GGGAGCUuUGg -5' |
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24005 | 3' | -52.4 | NC_005262.1 | + | 45036 | 0.69 | 0.790399 |
Target: 5'- gGCGGCCAu--CugCUCCugacgCUCGggGCUg -3' miRNA: 3'- -CGCUGGUcauGugGAGG-----GAGCuuUGG- -5' |
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24005 | 3' | -52.4 | NC_005262.1 | + | 43850 | 0.67 | 0.86244 |
Target: 5'- cGCGG-CGGUGCGCCggcaggaCCUCGGcgcGAUCg -3' miRNA: 3'- -CGCUgGUCAUGUGGag-----GGAGCU---UUGG- -5' |
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24005 | 3' | -52.4 | NC_005262.1 | + | 42504 | 0.68 | 0.809596 |
Target: 5'- uGCGGCCGGcugGCGCCgCCUga-AAGCCg -3' miRNA: 3'- -CGCUGGUCa--UGUGGaGGGagcUUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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