miRNA display CGI


Results 41 - 57 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24005 3' -52.4 NC_005262.1 + 21432 0.66 0.900018
Target:  5'- cGCGGCC--UugGCCg-CCUCGAucGCCu -3'
miRNA:   3'- -CGCUGGucAugUGGagGGAGCUu-UGG- -5'
24005 3' -52.4 NC_005262.1 + 19432 0.66 0.919407
Target:  5'- uGUGugCAGUACAUCgaagagcagugCCUcCGAGACa -3'
miRNA:   3'- -CGCugGUCAUGUGGa----------GGGaGCUUUGg -5'
24005 3' -52.4 NC_005262.1 + 18381 0.69 0.760402
Target:  5'- aGCGaACCGGcGCGCCUaCC-CGAAACg -3'
miRNA:   3'- -CGC-UGGUCaUGUGGAgGGaGCUUUGg -5'
24005 3' -52.4 NC_005262.1 + 18244 0.7 0.739732
Target:  5'- cGCGAUCAGgcggGCACgcgCUCCCggUUGAGGCg -3'
miRNA:   3'- -CGCUGGUCa---UGUG---GAGGG--AGCUUUGg -5'
24005 3' -52.4 NC_005262.1 + 16950 0.66 0.88427
Target:  5'- cGCGGCCGG-GCGCCUgCaucaguugaugaUCGAaccGACCu -3'
miRNA:   3'- -CGCUGGUCaUGUGGAgGg-----------AGCU---UUGG- -5'
24005 3' -52.4 NC_005262.1 + 14038 0.66 0.913215
Target:  5'- uGCGACCAGcggcuCAUCUUCUcCGGcaAGCCc -3'
miRNA:   3'- -CGCUGGUCau---GUGGAGGGaGCU--UUGG- -5'
24005 3' -52.4 NC_005262.1 + 14019 0.66 0.919407
Target:  5'- aGCGugCAGU-CGCUUggcggaCCCUgGAcGCCc -3'
miRNA:   3'- -CGCugGUCAuGUGGA------GGGAgCUuUGG- -5'
24005 3' -52.4 NC_005262.1 + 13939 0.73 0.566202
Target:  5'- aCGGCCGGUGCugCgCCaUCGAGucGCCg -3'
miRNA:   3'- cGCUGGUCAUGugGaGGgAGCUU--UGG- -5'
24005 3' -52.4 NC_005262.1 + 12936 0.66 0.919407
Target:  5'- cGCGAagcUCGGcacgACGgUUCCCgCGAGGCCg -3'
miRNA:   3'- -CGCU---GGUCa---UGUgGAGGGaGCUUUGG- -5'
24005 3' -52.4 NC_005262.1 + 11968 0.66 0.893017
Target:  5'- cGCGGCCAccuuucgcgcGaUACACgUCgCCgacagCGggGCCg -3'
miRNA:   3'- -CGCUGGU----------C-AUGUGgAG-GGa----GCuuUGG- -5'
24005 3' -52.4 NC_005262.1 + 11099 0.66 0.900018
Target:  5'- cGCGA-CAGc-CGCCUCgCUCGucAGCCg -3'
miRNA:   3'- -CGCUgGUCauGUGGAGgGAGCu-UUGG- -5'
24005 3' -52.4 NC_005262.1 + 9220 0.68 0.800085
Target:  5'- cCGACCGGcccgGCGCCggUCCUCauAGCCg -3'
miRNA:   3'- cGCUGGUCa---UGUGGa-GGGAGcuUUGG- -5'
24005 3' -52.4 NC_005262.1 + 8360 0.7 0.739732
Target:  5'- aGCGACgCGG-GCAgCUUCCUCG--GCCg -3'
miRNA:   3'- -CGCUG-GUCaUGUgGAGGGAGCuuUGG- -5'
24005 3' -52.4 NC_005262.1 + 6309 0.66 0.919407
Target:  5'- uGCGcucGCCGGc-CGCCUCUCgUCGgcGCCc -3'
miRNA:   3'- -CGC---UGGUCauGUGGAGGG-AGCuuUGG- -5'
24005 3' -52.4 NC_005262.1 + 5274 0.66 0.900018
Target:  5'- cGCG-CCGGccGCGCCcgcgCCCgCGAcGCCg -3'
miRNA:   3'- -CGCuGGUCa-UGUGGa---GGGaGCUuUGG- -5'
24005 3' -52.4 NC_005262.1 + 3914 0.69 0.770546
Target:  5'- cGCG-CgGGgcgcucgGCACCUUCCUCcGGGCCg -3'
miRNA:   3'- -CGCuGgUCa------UGUGGAGGGAGcUUUGG- -5'
24005 3' -52.4 NC_005262.1 + 2750 0.71 0.664583
Target:  5'- gGCGGCCAGgACGCCg-CC-CGgcGCCg -3'
miRNA:   3'- -CGCUGGUCaUGUGGagGGaGCuuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.