miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24005 3' -52.4 NC_005262.1 + 22626 1.14 0.001251
Target:  5'- gGCGACCAGUACACCUCCCUCGAAACCu -3'
miRNA:   3'- -CGCUGGUCAUGUGGAGGGAGCUUUGG- -5'
24005 3' -52.4 NC_005262.1 + 60485 0.66 0.919407
Target:  5'- cGCGAUCAGggcgagACGCCgggCCgCgcggCGcAGGCCg -3'
miRNA:   3'- -CGCUGGUCa-----UGUGGa--GG-Ga---GC-UUUGG- -5'
24005 3' -52.4 NC_005262.1 + 14019 0.66 0.919407
Target:  5'- aGCGugCAGU-CGCUUggcggaCCCUgGAcGCCc -3'
miRNA:   3'- -CGCugGUCAuGUGGA------GGGAgCUuUGG- -5'
24005 3' -52.4 NC_005262.1 + 6309 0.66 0.919407
Target:  5'- uGCGcucGCCGGc-CGCCUCUCgUCGgcGCCc -3'
miRNA:   3'- -CGC---UGGUCauGUGGAGGG-AGCuuUGG- -5'
24005 3' -52.4 NC_005262.1 + 47155 0.66 0.913215
Target:  5'- cGCGACCGGcgaggcgcGCACCacuUUCgUCGAcaagAACCa -3'
miRNA:   3'- -CGCUGGUCa-------UGUGG---AGGgAGCU----UUGG- -5'
24005 3' -52.4 NC_005262.1 + 39417 0.66 0.913215
Target:  5'- -gGAUCGGUAUggggcgGCCUgCUCUCGGAuuACCu -3'
miRNA:   3'- cgCUGGUCAUG------UGGA-GGGAGCUU--UGG- -5'
24005 3' -52.4 NC_005262.1 + 28100 0.66 0.906752
Target:  5'- --uGCCGGUACAUCUUCCgcgUGAagugggucGACCu -3'
miRNA:   3'- cgcUGGUCAUGUGGAGGGa--GCU--------UUGG- -5'
24005 3' -52.4 NC_005262.1 + 61493 0.66 0.893017
Target:  5'- cGCGGCCGGaACAgucggaaaugaUCUCgCUCGAccggauGACCc -3'
miRNA:   3'- -CGCUGGUCaUGU-----------GGAGgGAGCU------UUGG- -5'
24005 3' -52.4 NC_005262.1 + 43850 0.67 0.86244
Target:  5'- cGCGG-CGGUGCGCCggcaggaCCUCGGcgcGAUCg -3'
miRNA:   3'- -CGCUgGUCAUGUGGag-----GGAGCU---UUGG- -5'
24005 3' -52.4 NC_005262.1 + 48061 0.67 0.86244
Target:  5'- cGCG-UCGGUcGCACCUgCCgCGAcgAGCCg -3'
miRNA:   3'- -CGCuGGUCA-UGUGGAgGGaGCU--UUGG- -5'
24005 3' -52.4 NC_005262.1 + 35251 0.68 0.836097
Target:  5'- aGCGGCUGG-GCGCC-CCCggCGAacggcacGACCa -3'
miRNA:   3'- -CGCUGGUCaUGUGGaGGGa-GCU-------UUGG- -5'
24005 3' -52.4 NC_005262.1 + 22678 0.73 0.544704
Target:  5'- cGCgGACCAGUGCGCagacgCgCCUCGAccGCCu -3'
miRNA:   3'- -CG-CUGGUCAUGUGga---G-GGAGCUu-UGG- -5'
24005 3' -52.4 NC_005262.1 + 50038 0.72 0.60977
Target:  5'- cCGAgCCGGcgccgGCugCUCCCgagaCGAAGCCg -3'
miRNA:   3'- cGCU-GGUCa----UGugGAGGGa---GCUUUGG- -5'
24005 3' -52.4 NC_005262.1 + 53328 0.71 0.65364
Target:  5'- aGCGACCGcGcGCGCCgcuaCCUCGccGACCg -3'
miRNA:   3'- -CGCUGGU-CaUGUGGag--GGAGCu-UUGG- -5'
24005 3' -52.4 NC_005262.1 + 58983 0.7 0.728174
Target:  5'- gGCGGCCuc-ACGCCUCCCgcgccgucgcgcuUCGAccgucugcaAGCCg -3'
miRNA:   3'- -CGCUGGucaUGUGGAGGG-------------AGCU---------UUGG- -5'
24005 3' -52.4 NC_005262.1 + 23845 0.69 0.770546
Target:  5'- -aGGCCGGcACGCCgCCCUUGccgguGCCg -3'
miRNA:   3'- cgCUGGUCaUGUGGaGGGAGCuu---UGG- -5'
24005 3' -52.4 NC_005262.1 + 27409 0.68 0.808654
Target:  5'- gGCGACgGGcgaACGCgCUCCgUCGAgauucuuGACCa -3'
miRNA:   3'- -CGCUGgUCa--UGUG-GAGGgAGCU-------UUGG- -5'
24005 3' -52.4 NC_005262.1 + 30886 0.68 0.809596
Target:  5'- aGCGGCCGGauggugACGCCgcucgCgCUCGAGgauggcACCa -3'
miRNA:   3'- -CGCUGGUCa-----UGUGGa----GgGAGCUU------UGG- -5'
24005 3' -52.4 NC_005262.1 + 33744 0.74 0.512982
Target:  5'- gGCGACCAGcgagGCGCgCUCgucagCCUCGGAcACCu -3'
miRNA:   3'- -CGCUGGUCa---UGUG-GAG-----GGAGCUU-UGG- -5'
24005 3' -52.4 NC_005262.1 + 19432 0.66 0.919407
Target:  5'- uGUGugCAGUACAUCgaagagcagugCCUcCGAGACa -3'
miRNA:   3'- -CGCugGUCAUGUGGa----------GGGaGCUUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.