miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24005 3' -52.4 NC_005262.1 + 45786 0.66 0.885754
Target:  5'- aCGGCCGGcu-GCCggCCCUCGAuGCg -3'
miRNA:   3'- cGCUGGUCaugUGGa-GGGAGCUuUGg -5'
24005 3' -52.4 NC_005262.1 + 16950 0.66 0.88427
Target:  5'- cGCGGCCGG-GCGCCUgCaucaguugaugaUCGAaccGACCu -3'
miRNA:   3'- -CGCUGGUCaUGUGGAgGg-----------AGCU---UUGG- -5'
24005 3' -52.4 NC_005262.1 + 24246 0.67 0.878232
Target:  5'- aCGugCAggcGUGCGCCUCcugccgcccauCCUCGAAcgucACCc -3'
miRNA:   3'- cGCugGU---CAUGUGGAG-----------GGAGCUU----UGG- -5'
24005 3' -52.4 NC_005262.1 + 29538 0.67 0.878232
Target:  5'- gGCGACC--UGCGCCUCugccgcagCCUUGcGGGCCu -3'
miRNA:   3'- -CGCUGGucAUGUGGAG--------GGAGC-UUUGG- -5'
24005 3' -52.4 NC_005262.1 + 42373 0.67 0.870459
Target:  5'- cGCGagaacacgucGCCGGUGC-CCgugCCgCUCGucGCCg -3'
miRNA:   3'- -CGC----------UGGUCAUGuGGa--GG-GAGCuuUGG- -5'
24005 3' -52.4 NC_005262.1 + 53783 0.67 0.85834
Target:  5'- cGCGGCCGGguucugcGCGCCcggcugauagaugCCCUCGGGcagguuggcgaucGCCu -3'
miRNA:   3'- -CGCUGGUCa------UGUGGa------------GGGAGCUU-------------UGG- -5'
24005 3' -52.4 NC_005262.1 + 42504 0.68 0.809596
Target:  5'- uGCGGCCGGcugGCGCCgCCUga-AAGCCg -3'
miRNA:   3'- -CGCUGGUCa--UGUGGaGGGagcUUUGG- -5'
24005 3' -52.4 NC_005262.1 + 9220 0.68 0.800085
Target:  5'- cCGACCGGcccgGCGCCggUCCUCauAGCCg -3'
miRNA:   3'- cGCUGGUCa---UGUGGa-GGGAGcuUUGG- -5'
24005 3' -52.4 NC_005262.1 + 42233 0.66 0.895849
Target:  5'- cGCGACCGGgcccgGCGCCgcguagaccggcuuaUCCC---AAGCCa -3'
miRNA:   3'- -CGCUGGUCa----UGUGG---------------AGGGagcUUUGG- -5'
24005 3' -52.4 NC_005262.1 + 21432 0.66 0.900018
Target:  5'- cGCGGCC--UugGCCg-CCUCGAucGCCu -3'
miRNA:   3'- -CGCUGGucAugUGGagGGAGCUu-UGG- -5'
24005 3' -52.4 NC_005262.1 + 11099 0.66 0.900018
Target:  5'- cGCGA-CAGc-CGCCUCgCUCGucAGCCg -3'
miRNA:   3'- -CGCUgGUCauGUGGAGgGAGCu-UUGG- -5'
24005 3' -52.4 NC_005262.1 + 19432 0.66 0.919407
Target:  5'- uGUGugCAGUACAUCgaagagcagugCCUcCGAGACa -3'
miRNA:   3'- -CGCugGUCAUGUGGa----------GGGaGCUUUGg -5'
24005 3' -52.4 NC_005262.1 + 28770 0.66 0.919407
Target:  5'- uCGACC---GCGCCUUCCUCcaucaGGACCu -3'
miRNA:   3'- cGCUGGucaUGUGGAGGGAGc----UUUGG- -5'
24005 3' -52.4 NC_005262.1 + 61217 0.66 0.9188
Target:  5'- uGCG-CCAgcgcgucGUACACCgUCCCcuUCGucGCCc -3'
miRNA:   3'- -CGCuGGU-------CAUGUGG-AGGG--AGCuuUGG- -5'
24005 3' -52.4 NC_005262.1 + 54505 0.66 0.915725
Target:  5'- gGCGGCC--UGCGCCUCCg-CGAGcuugcgcacgacguuGCCc -3'
miRNA:   3'- -CGCUGGucAUGUGGAGGgaGCUU---------------UGG- -5'
24005 3' -52.4 NC_005262.1 + 33360 0.66 0.913215
Target:  5'- cGCGAUgCGGUACGCCUCgCggaUCGAcaggaAGCg -3'
miRNA:   3'- -CGCUG-GUCAUGUGGAGgG---AGCU-----UUGg -5'
24005 3' -52.4 NC_005262.1 + 14038 0.66 0.913215
Target:  5'- uGCGACCAGcggcuCAUCUUCUcCGGcaAGCCc -3'
miRNA:   3'- -CGCUGGUCau---GUGGAGGGaGCU--UUGG- -5'
24005 3' -52.4 NC_005262.1 + 56819 0.66 0.913215
Target:  5'- gGCGGCCAuGUcgaACGCCgacgCCUCGGAcacguCCu -3'
miRNA:   3'- -CGCUGGU-CA---UGUGGag--GGAGCUUu----GG- -5'
24005 3' -52.4 NC_005262.1 + 26882 0.66 0.906752
Target:  5'- -aGGCCGG-GCGCCUCaagCGAAuccGCCa -3'
miRNA:   3'- cgCUGGUCaUGUGGAGggaGCUU---UGG- -5'
24005 3' -52.4 NC_005262.1 + 5274 0.66 0.900018
Target:  5'- cGCG-CCGGccGCGCCcgcgCCCgCGAcGCCg -3'
miRNA:   3'- -CGCuGGUCa-UGUGGa---GGGaGCUuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.