Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24006 | 3' | -56.2 | NC_005262.1 | + | 23010 | 1.09 | 0.000843 |
Target: 5'- gUGCGGCAUGAAUGCGGCUUCCGCGUGg -3' miRNA: 3'- -ACGCCGUACUUACGCCGAAGGCGCAC- -5' |
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24006 | 3' | -56.2 | NC_005262.1 | + | 11496 | 0.75 | 0.218251 |
Target: 5'- gGCGGCccGGcgcggcGCGGCUUCgGCGUGg -3' miRNA: 3'- aCGCCGuaCUua----CGCCGAAGgCGCAC- -5' |
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24006 | 3' | -56.2 | NC_005262.1 | + | 12697 | 0.72 | 0.335092 |
Target: 5'- aUGCGGCGaggGAggGCGcGCUcaUCCGCGa- -3' miRNA: 3'- -ACGCCGUa--CUuaCGC-CGA--AGGCGCac -5' |
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24006 | 3' | -56.2 | NC_005262.1 | + | 15279 | 0.71 | 0.395887 |
Target: 5'- cGCGGCAUGGAUGCuGCcagucgucgauucgCCGCGc- -3' miRNA: 3'- aCGCCGUACUUACGcCGaa------------GGCGCac -5' |
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24006 | 3' | -56.2 | NC_005262.1 | + | 49824 | 0.7 | 0.413321 |
Target: 5'- cGcCGGCGUcGGUGCGGCUUCgGCc-- -3' miRNA: 3'- aC-GCCGUAcUUACGCCGAAGgCGcac -5' |
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24006 | 3' | -56.2 | NC_005262.1 | + | 23229 | 0.7 | 0.422684 |
Target: 5'- aGCGGUAUGcgaagcgcGGUGCGGCgaaCGgGUGg -3' miRNA: 3'- aCGCCGUAC--------UUACGCCGaagGCgCAC- -5' |
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24006 | 3' | -56.2 | NC_005262.1 | + | 48440 | 0.7 | 0.428363 |
Target: 5'- gGCGGCAUGAccacgcgcgcguAUGCcGCgcggaucgcgagCCGCGUGg -3' miRNA: 3'- aCGCCGUACU------------UACGcCGaa----------GGCGCAC- -5' |
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24006 | 3' | -56.2 | NC_005262.1 | + | 49669 | 0.69 | 0.482411 |
Target: 5'- gGCGGCAUGGGgauggucgGCGGCgcgcgcaaccugaaCCGCGa- -3' miRNA: 3'- aCGCCGUACUUa-------CGCCGaa------------GGCGCac -5' |
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24006 | 3' | -56.2 | NC_005262.1 | + | 14676 | 0.69 | 0.491571 |
Target: 5'- gUGUGGUguuguUGggUGCGGUg--CGCGUGa -3' miRNA: 3'- -ACGCCGu----ACuuACGCCGaagGCGCAC- -5' |
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24006 | 3' | -56.2 | NC_005262.1 | + | 16973 | 0.69 | 0.522656 |
Target: 5'- gUGCGGUGUG-GUGCGGCccggCgCGCGg- -3' miRNA: 3'- -ACGCCGUACuUACGCCGaa--G-GCGCac -5' |
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24006 | 3' | -56.2 | NC_005262.1 | + | 34108 | 0.68 | 0.537422 |
Target: 5'- cGCGGCGcacGAUGCGGCccggcgucacgccgUCCGCGc- -3' miRNA: 3'- aCGCCGUac-UUACGCCGa-------------AGGCGCac -5' |
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24006 | 3' | -56.2 | NC_005262.1 | + | 30203 | 0.68 | 0.543795 |
Target: 5'- aGCGGCAcgaucgUGGGcuucGCGGCggCCgGCGUGu -3' miRNA: 3'- aCGCCGU------ACUUa---CGCCGaaGG-CGCAC- -5' |
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24006 | 3' | -56.2 | NC_005262.1 | + | 29732 | 0.68 | 0.543795 |
Target: 5'- gGCGGCAUGccgcucgcugccGAUGcCGGUUgCgGCGUGu -3' miRNA: 3'- aCGCCGUAC------------UUAC-GCCGAaGgCGCAC- -5' |
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24006 | 3' | -56.2 | NC_005262.1 | + | 23407 | 0.68 | 0.550192 |
Target: 5'- gGCGGCG---AUGCGGCgggcagcaugagCCGCGUc -3' miRNA: 3'- aCGCCGUacuUACGCCGaa----------GGCGCAc -5' |
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24006 | 3' | -56.2 | NC_005262.1 | + | 49574 | 0.68 | 0.55447 |
Target: 5'- cUGCGcGCAccgccggaGAAUGCGcGCUUCaGCGUGc -3' miRNA: 3'- -ACGC-CGUa-------CUUACGC-CGAAGgCGCAC- -5' |
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24006 | 3' | -56.2 | NC_005262.1 | + | 12591 | 0.68 | 0.575995 |
Target: 5'- cGCGGCAucUGAAgcGCGGUUUCgcucacUGCGUa -3' miRNA: 3'- aCGCCGU--ACUUa-CGCCGAAG------GCGCAc -5' |
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24006 | 3' | -56.2 | NC_005262.1 | + | 42153 | 0.67 | 0.58683 |
Target: 5'- gGcCGGCggGAAU-CGuGCUgaUCCGCGUGa -3' miRNA: 3'- aC-GCCGuaCUUAcGC-CGA--AGGCGCAC- -5' |
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24006 | 3' | -56.2 | NC_005262.1 | + | 53209 | 0.67 | 0.597702 |
Target: 5'- cGCGGCAUc---GCGGUUUUCGUGa- -3' miRNA: 3'- aCGCCGUAcuuaCGCCGAAGGCGCac -5' |
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24006 | 3' | -56.2 | NC_005262.1 | + | 5452 | 0.67 | 0.619525 |
Target: 5'- cGCGGCAUGAccucGCGGCgaaccucgCCGUu-- -3' miRNA: 3'- aCGCCGUACUua--CGCCGaa------GGCGcac -5' |
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24006 | 3' | -56.2 | NC_005262.1 | + | 10858 | 0.67 | 0.619525 |
Target: 5'- gGCGGCAUGAGUGagGGCgcgguaaUGgGUGc -3' miRNA: 3'- aCGCCGUACUUACg-CCGaag----GCgCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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