miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24006 3' -56.2 NC_005262.1 + 30203 0.68 0.543795
Target:  5'- aGCGGCAcgaucgUGGGcuucGCGGCggCCgGCGUGu -3'
miRNA:   3'- aCGCCGU------ACUUa---CGCCGaaGG-CGCAC- -5'
24006 3' -56.2 NC_005262.1 + 34108 0.68 0.537422
Target:  5'- cGCGGCGcacGAUGCGGCccggcgucacgccgUCCGCGc- -3'
miRNA:   3'- aCGCCGUac-UUACGCCGa-------------AGGCGCac -5'
24006 3' -56.2 NC_005262.1 + 16973 0.69 0.522656
Target:  5'- gUGCGGUGUG-GUGCGGCccggCgCGCGg- -3'
miRNA:   3'- -ACGCCGUACuUACGCCGaa--G-GCGCac -5'
24006 3' -56.2 NC_005262.1 + 14676 0.69 0.491571
Target:  5'- gUGUGGUguuguUGggUGCGGUg--CGCGUGa -3'
miRNA:   3'- -ACGCCGu----ACuuACGCCGaagGCGCAC- -5'
24006 3' -56.2 NC_005262.1 + 49669 0.69 0.482411
Target:  5'- gGCGGCAUGGGgauggucgGCGGCgcgcgcaaccugaaCCGCGa- -3'
miRNA:   3'- aCGCCGUACUUa-------CGCCGaa------------GGCGCac -5'
24006 3' -56.2 NC_005262.1 + 48440 0.7 0.428363
Target:  5'- gGCGGCAUGAccacgcgcgcguAUGCcGCgcggaucgcgagCCGCGUGg -3'
miRNA:   3'- aCGCCGUACU------------UACGcCGaa----------GGCGCAC- -5'
24006 3' -56.2 NC_005262.1 + 23229 0.7 0.422684
Target:  5'- aGCGGUAUGcgaagcgcGGUGCGGCgaaCGgGUGg -3'
miRNA:   3'- aCGCCGUAC--------UUACGCCGaagGCgCAC- -5'
24006 3' -56.2 NC_005262.1 + 49824 0.7 0.413321
Target:  5'- cGcCGGCGUcGGUGCGGCUUCgGCc-- -3'
miRNA:   3'- aC-GCCGUAcUUACGCCGAAGgCGcac -5'
24006 3' -56.2 NC_005262.1 + 15279 0.71 0.395887
Target:  5'- cGCGGCAUGGAUGCuGCcagucgucgauucgCCGCGc- -3'
miRNA:   3'- aCGCCGUACUUACGcCGaa------------GGCGCac -5'
24006 3' -56.2 NC_005262.1 + 12697 0.72 0.335092
Target:  5'- aUGCGGCGaggGAggGCGcGCUcaUCCGCGa- -3'
miRNA:   3'- -ACGCCGUa--CUuaCGC-CGA--AGGCGCac -5'
24006 3' -56.2 NC_005262.1 + 11496 0.75 0.218251
Target:  5'- gGCGGCccGGcgcggcGCGGCUUCgGCGUGg -3'
miRNA:   3'- aCGCCGuaCUua----CGCCGAAGgCGCAC- -5'
24006 3' -56.2 NC_005262.1 + 23010 1.09 0.000843
Target:  5'- gUGCGGCAUGAAUGCGGCUUCCGCGUGg -3'
miRNA:   3'- -ACGCCGUACUUACGCCGAAGGCGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.