Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24006 | 3' | -56.2 | NC_005262.1 | + | 53209 | 0.67 | 0.597702 |
Target: 5'- cGCGGCAUc---GCGGUUUUCGUGa- -3' miRNA: 3'- aCGCCGUAcuuaCGCCGAAGGCGCac -5' |
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24006 | 3' | -56.2 | NC_005262.1 | + | 49824 | 0.7 | 0.413321 |
Target: 5'- cGcCGGCGUcGGUGCGGCUUCgGCc-- -3' miRNA: 3'- aC-GCCGUAcUUACGCCGAAGgCGcac -5' |
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24006 | 3' | -56.2 | NC_005262.1 | + | 49669 | 0.69 | 0.482411 |
Target: 5'- gGCGGCAUGGGgauggucgGCGGCgcgcgcaaccugaaCCGCGa- -3' miRNA: 3'- aCGCCGUACUUa-------CGCCGaa------------GGCGCac -5' |
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24006 | 3' | -56.2 | NC_005262.1 | + | 49574 | 0.68 | 0.55447 |
Target: 5'- cUGCGcGCAccgccggaGAAUGCGcGCUUCaGCGUGc -3' miRNA: 3'- -ACGC-CGUa-------CUUACGC-CGAAGgCGCAC- -5' |
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24006 | 3' | -56.2 | NC_005262.1 | + | 49222 | 0.66 | 0.684941 |
Target: 5'- gGCGGCcucg--GCGGCgcgcagUCCGCGc- -3' miRNA: 3'- aCGCCGuacuuaCGCCGa-----AGGCGCac -5' |
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24006 | 3' | -56.2 | NC_005262.1 | + | 48523 | 0.66 | 0.674102 |
Target: 5'- cGCGcGCGUGGucAUGCcGCcgUCCGuCGUGu -3' miRNA: 3'- aCGC-CGUACU--UACGcCGa-AGGC-GCAC- -5' |
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24006 | 3' | -56.2 | NC_005262.1 | + | 48440 | 0.7 | 0.428363 |
Target: 5'- gGCGGCAUGAccacgcgcgcguAUGCcGCgcggaucgcgagCCGCGUGg -3' miRNA: 3'- aCGCCGUACU------------UACGcCGaa----------GGCGCAC- -5' |
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24006 | 3' | -56.2 | NC_005262.1 | + | 46580 | 0.66 | 0.69573 |
Target: 5'- cGCGGUcgGAGUGCucaugucgacgGGCUg-CGuCGUGg -3' miRNA: 3'- aCGCCGuaCUUACG-----------CCGAagGC-GCAC- -5' |
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24006 | 3' | -56.2 | NC_005262.1 | + | 43912 | 0.66 | 0.69573 |
Target: 5'- cGCGGCcgGcccGCGGCcgugucgCCGCGa- -3' miRNA: 3'- aCGCCGuaCuuaCGCCGaa-----GGCGCac -5' |
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24006 | 3' | -56.2 | NC_005262.1 | + | 42153 | 0.67 | 0.58683 |
Target: 5'- gGcCGGCggGAAU-CGuGCUgaUCCGCGUGa -3' miRNA: 3'- aC-GCCGuaCUUAcGC-CGA--AGGCGCAC- -5' |
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24006 | 3' | -56.2 | NC_005262.1 | + | 34108 | 0.68 | 0.537422 |
Target: 5'- cGCGGCGcacGAUGCGGCccggcgucacgccgUCCGCGc- -3' miRNA: 3'- aCGCCGUac-UUACGCCGa-------------AGGCGCac -5' |
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24006 | 3' | -56.2 | NC_005262.1 | + | 30203 | 0.68 | 0.543795 |
Target: 5'- aGCGGCAcgaucgUGGGcuucGCGGCggCCgGCGUGu -3' miRNA: 3'- aCGCCGU------ACUUa---CGCCGaaGG-CGCAC- -5' |
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24006 | 3' | -56.2 | NC_005262.1 | + | 29732 | 0.68 | 0.543795 |
Target: 5'- gGCGGCAUGccgcucgcugccGAUGcCGGUUgCgGCGUGu -3' miRNA: 3'- aCGCCGUAC------------UUAC-GCCGAaGgCGCAC- -5' |
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24006 | 3' | -56.2 | NC_005262.1 | + | 24328 | 0.66 | 0.674102 |
Target: 5'- gGuCGGCGcGAucgacAUGCGGC-UCUGCGUc -3' miRNA: 3'- aC-GCCGUaCU-----UACGCCGaAGGCGCAc -5' |
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24006 | 3' | -56.2 | NC_005262.1 | + | 23407 | 0.68 | 0.550192 |
Target: 5'- gGCGGCG---AUGCGGCgggcagcaugagCCGCGUc -3' miRNA: 3'- aCGCCGUacuUACGCCGaa----------GGCGCAc -5' |
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24006 | 3' | -56.2 | NC_005262.1 | + | 23356 | 0.66 | 0.674102 |
Target: 5'- gGcCGGCGUGAAgcgcgcgGCGGCgaaggcCCGCaacGUGa -3' miRNA: 3'- aC-GCCGUACUUa------CGCCGaa----GGCG---CAC- -5' |
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24006 | 3' | -56.2 | NC_005262.1 | + | 23229 | 0.7 | 0.422684 |
Target: 5'- aGCGGUAUGcgaagcgcGGUGCGGCgaaCGgGUGg -3' miRNA: 3'- aCGCCGUAC--------UUACGCCGaagGCgCAC- -5' |
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24006 | 3' | -56.2 | NC_005262.1 | + | 23010 | 1.09 | 0.000843 |
Target: 5'- gUGCGGCAUGAAUGCGGCUUCCGCGUGg -3' miRNA: 3'- -ACGCCGUACUUACGCCGAAGGCGCAC- -5' |
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24006 | 3' | -56.2 | NC_005262.1 | + | 22318 | 0.66 | 0.674102 |
Target: 5'- gGcCGGCGUGg--GCGGCgcggCCGUGa- -3' miRNA: 3'- aC-GCCGUACuuaCGCCGaa--GGCGCac -5' |
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24006 | 3' | -56.2 | NC_005262.1 | + | 21632 | 0.66 | 0.667579 |
Target: 5'- gGCGGCAUcugcuucaggaccgcGAGcUGCaccGCUUCCGUGUa -3' miRNA: 3'- aCGCCGUA---------------CUU-ACGc--CGAAGGCGCAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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