miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24006 5' -55.8 NC_005262.1 + 12354 0.66 0.750611
Target:  5'- uCGcCGGCCGcgaucgacaGGUGCccgacCAUCGACGCGAc -3'
miRNA:   3'- -GC-GUCGGC---------CUAUGac---GUAGCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 34501 0.66 0.750611
Target:  5'- gGCGGCgCGcGAcuuCUGCGagaCGACGCGGc -3'
miRNA:   3'- gCGUCG-GC-CUau-GACGUa--GCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 18978 0.66 0.740355
Target:  5'- cCGUGGUCGGG-ACUGgAUgCGGCGCa- -3'
miRNA:   3'- -GCGUCGGCCUaUGACgUA-GCUGCGcu -5'
24006 5' -55.8 NC_005262.1 + 24299 0.66 0.740355
Target:  5'- aCGCucGCCGcccuGAUGCUucucGCgaugGUCGGCGCGAu -3'
miRNA:   3'- -GCGu-CGGC----CUAUGA----CG----UAGCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 31922 0.66 0.740355
Target:  5'- aCGC-GCCGGAcgucgccaccUGCUGUAcggcggUGugGCGAc -3'
miRNA:   3'- -GCGuCGGCCU----------AUGACGUa-----GCugCGCU- -5'
24006 5' -55.8 NC_005262.1 + 5423 0.66 0.740355
Target:  5'- aCGCgAGCCGGGUcuuuucgaUGUccCGGCGCGGc -3'
miRNA:   3'- -GCG-UCGGCCUAug------ACGuaGCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 10520 0.66 0.729993
Target:  5'- aGCAGCgCGGggGCggccgaaacgGCuaugcCGACGCGAc -3'
miRNA:   3'- gCGUCG-GCCuaUGa---------CGua---GCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 11496 0.66 0.729993
Target:  5'- gGCGGcCCGGcgcgGCgcgGCuUCGGCGUGGa -3'
miRNA:   3'- gCGUC-GGCCua--UGa--CGuAGCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 50086 0.66 0.729993
Target:  5'- gGC-GCCGGcgcgGCUuCAUCGGCGgGAg -3'
miRNA:   3'- gCGuCGGCCua--UGAcGUAGCUGCgCU- -5'
24006 5' -55.8 NC_005262.1 + 29521 0.66 0.729993
Target:  5'- cCGCAGCCuugcGGGccuucgccUGCUGCuccUCGAgcguCGCGAu -3'
miRNA:   3'- -GCGUCGG----CCU--------AUGACGu--AGCU----GCGCU- -5'
24006 5' -55.8 NC_005262.1 + 59045 0.66 0.729993
Target:  5'- gGCGGCCGG---CUGguUCGACuGCu- -3'
miRNA:   3'- gCGUCGGCCuauGACguAGCUG-CGcu -5'
24006 5' -55.8 NC_005262.1 + 50923 0.66 0.719536
Target:  5'- uGCGcGCgGGAUGCcaGCGUgcccgucucCGGCGCGAa -3'
miRNA:   3'- gCGU-CGgCCUAUGa-CGUA---------GCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 46756 0.66 0.719536
Target:  5'- cCGCcacGCCGGucGUACagGCggCGACGCGc -3'
miRNA:   3'- -GCGu--CGGCC--UAUGa-CGuaGCUGCGCu -5'
24006 5' -55.8 NC_005262.1 + 61706 0.66 0.719536
Target:  5'- gGCGcGCCGGGUuc-GC-UCGGCGCGc -3'
miRNA:   3'- gCGU-CGGCCUAugaCGuAGCUGCGCu -5'
24006 5' -55.8 NC_005262.1 + 11126 0.66 0.708995
Target:  5'- uGCGGCCuGuUGCUGCGcgCGgucuuGCGCGAc -3'
miRNA:   3'- gCGUCGGcCuAUGACGUa-GC-----UGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 47747 0.66 0.708995
Target:  5'- gCGCcGCCGGccgcgGCgaacccgGCAUCG-CGCGGg -3'
miRNA:   3'- -GCGuCGGCCua---UGa------CGUAGCuGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 5141 0.66 0.708995
Target:  5'- gGCGGCgCuGAUcCUGC-UCGGCGCGc -3'
miRNA:   3'- gCGUCG-GcCUAuGACGuAGCUGCGCu -5'
24006 5' -55.8 NC_005262.1 + 5198 0.66 0.704758
Target:  5'- gCGCGGCCGGcgcgaccgagggcGUAucCUGCAcgaucgccguggcgUCGACGCc- -3'
miRNA:   3'- -GCGUCGGCC-------------UAU--GACGU--------------AGCUGCGcu -5'
24006 5' -55.8 NC_005262.1 + 47825 0.67 0.700509
Target:  5'- cCGCGGCCGGcgGCgcaccagauacagGCGgcgagccgccgccCGGCGCGGu -3'
miRNA:   3'- -GCGUCGGCCuaUGa------------CGUa------------GCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 50961 0.67 0.698381
Target:  5'- aGCGcGCCGuGcgAUUGCGUCGGCaccuGCGGc -3'
miRNA:   3'- gCGU-CGGC-CuaUGACGUAGCUG----CGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.