Results 1 - 20 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24006 | 5' | -55.8 | NC_005262.1 | + | 24299 | 0.66 | 0.740355 |
Target: 5'- aCGCucGCCGcccuGAUGCUucucGCgaugGUCGGCGCGAu -3' miRNA: 3'- -GCGu-CGGC----CUAUGA----CG----UAGCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 61706 | 0.66 | 0.719536 |
Target: 5'- gGCGcGCCGGGUuc-GC-UCGGCGCGc -3' miRNA: 3'- gCGU-CGGCCUAugaCGuAGCUGCGCu -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 5423 | 0.66 | 0.740355 |
Target: 5'- aCGCgAGCCGGGUcuuuucgaUGUccCGGCGCGGc -3' miRNA: 3'- -GCG-UCGGCCUAug------ACGuaGCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 31922 | 0.66 | 0.740355 |
Target: 5'- aCGC-GCCGGAcgucgccaccUGCUGUAcggcggUGugGCGAc -3' miRNA: 3'- -GCGuCGGCCU----------AUGACGUa-----GCugCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 46756 | 0.66 | 0.719536 |
Target: 5'- cCGCcacGCCGGucGUACagGCggCGACGCGc -3' miRNA: 3'- -GCGu--CGGCC--UAUGa-CGuaGCUGCGCu -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 10520 | 0.66 | 0.729993 |
Target: 5'- aGCAGCgCGGggGCggccgaaacgGCuaugcCGACGCGAc -3' miRNA: 3'- gCGUCG-GCCuaUGa---------CGua---GCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 34501 | 0.66 | 0.750611 |
Target: 5'- gGCGGCgCGcGAcuuCUGCGagaCGACGCGGc -3' miRNA: 3'- gCGUCG-GC-CUau-GACGUa--GCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 18978 | 0.66 | 0.740355 |
Target: 5'- cCGUGGUCGGG-ACUGgAUgCGGCGCa- -3' miRNA: 3'- -GCGUCGGCCUaUGACgUA-GCUGCGcu -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 11496 | 0.66 | 0.729993 |
Target: 5'- gGCGGcCCGGcgcgGCgcgGCuUCGGCGUGGa -3' miRNA: 3'- gCGUC-GGCCua--UGa--CGuAGCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 47747 | 0.66 | 0.708995 |
Target: 5'- gCGCcGCCGGccgcgGCgaacccgGCAUCG-CGCGGg -3' miRNA: 3'- -GCGuCGGCCua---UGa------CGUAGCuGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 5141 | 0.66 | 0.708995 |
Target: 5'- gGCGGCgCuGAUcCUGC-UCGGCGCGc -3' miRNA: 3'- gCGUCG-GcCUAuGACGuAGCUGCGCu -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 5198 | 0.66 | 0.704758 |
Target: 5'- gCGCGGCCGGcgcgaccgagggcGUAucCUGCAcgaucgccguggcgUCGACGCc- -3' miRNA: 3'- -GCGUCGGCC-------------UAU--GACGU--------------AGCUGCGcu -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 29521 | 0.66 | 0.729993 |
Target: 5'- cCGCAGCCuugcGGGccuucgccUGCUGCuccUCGAgcguCGCGAu -3' miRNA: 3'- -GCGUCGG----CCU--------AUGACGu--AGCU----GCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 12354 | 0.66 | 0.750611 |
Target: 5'- uCGcCGGCCGcgaucgacaGGUGCccgacCAUCGACGCGAc -3' miRNA: 3'- -GC-GUCGGC---------CUAUGac---GUAGCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 59045 | 0.66 | 0.729993 |
Target: 5'- gGCGGCCGG---CUGguUCGACuGCu- -3' miRNA: 3'- gCGUCGGCCuauGACguAGCUG-CGcu -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 50923 | 0.66 | 0.719536 |
Target: 5'- uGCGcGCgGGAUGCcaGCGUgcccgucucCGGCGCGAa -3' miRNA: 3'- gCGU-CGgCCUAUGa-CGUA---------GCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 11126 | 0.66 | 0.708995 |
Target: 5'- uGCGGCCuGuUGCUGCGcgCGgucuuGCGCGAc -3' miRNA: 3'- gCGUCGGcCuAUGACGUa-GC-----UGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 50086 | 0.66 | 0.729993 |
Target: 5'- gGC-GCCGGcgcgGCUuCAUCGGCGgGAg -3' miRNA: 3'- gCGuCGGCCua--UGAcGUAGCUGCgCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 48039 | 0.67 | 0.676978 |
Target: 5'- aGCAGCCGGccGCgcccgcaagcGCGUCGGuCGCa- -3' miRNA: 3'- gCGUCGGCCuaUGa---------CGUAGCU-GCGcu -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 4681 | 0.67 | 0.655409 |
Target: 5'- cCGCGGCCGGAUcgggccGCgGCAUCcagucguuGCGCa- -3' miRNA: 3'- -GCGUCGGCCUA------UGaCGUAGc-------UGCGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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