miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24006 5' -55.8 NC_005262.1 + 53903 0.67 0.687705
Target:  5'- uCGUGGaCGGGU-CUGCG-CGACGCGc -3'
miRNA:   3'- -GCGUCgGCCUAuGACGUaGCUGCGCu -5'
24006 5' -55.8 NC_005262.1 + 22304 0.67 0.687705
Target:  5'- gCGCGGCCGuGA-GCU-UGUCGAgCGCGAg -3'
miRNA:   3'- -GCGUCGGC-CUaUGAcGUAGCU-GCGCU- -5'
24006 5' -55.8 NC_005262.1 + 50961 0.67 0.698381
Target:  5'- aGCGcGCCGuGcgAUUGCGUCGGCaccuGCGGc -3'
miRNA:   3'- gCGU-CGGC-CuaUGACGUAGCUG----CGCU- -5'
24006 5' -55.8 NC_005262.1 + 47825 0.67 0.700509
Target:  5'- cCGCGGCCGGcgGCgcaccagauacagGCGgcgagccgccgccCGGCGCGGu -3'
miRNA:   3'- -GCGUCGGCCuaUGa------------CGUa------------GCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 4681 0.67 0.655409
Target:  5'- cCGCGGCCGGAUcgggccGCgGCAUCcagucguuGCGCa- -3'
miRNA:   3'- -GCGUCGGCCUA------UGaCGUAGc-------UGCGcu -5'
24006 5' -55.8 NC_005262.1 + 48039 0.67 0.676978
Target:  5'- aGCAGCCGGccGCgcccgcaagcGCGUCGGuCGCa- -3'
miRNA:   3'- gCGUCGGCCuaUGa---------CGUAGCU-GCGcu -5'
24006 5' -55.8 NC_005262.1 + 46778 0.67 0.687705
Target:  5'- uGCGcGCgCGGcgcugACUGCAUCGGCGgGc -3'
miRNA:   3'- gCGU-CG-GCCua---UGACGUAGCUGCgCu -5'
24006 5' -55.8 NC_005262.1 + 26498 0.67 0.666209
Target:  5'- aGCAGCgGGA-AC-GCGUCG-CGCGu -3'
miRNA:   3'- gCGUCGgCCUaUGaCGUAGCuGCGCu -5'
24006 5' -55.8 NC_005262.1 + 2329 0.67 0.648918
Target:  5'- aCGCGGCCcGAgACUuugcccuuacagggaGCGgcuUCGACGCGAu -3'
miRNA:   3'- -GCGUCGGcCUaUGA---------------CGU---AGCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 192 0.67 0.655409
Target:  5'- uCGcCGGCCGGugacAUGCgcagaaGCGUgCGGCGCGGc -3'
miRNA:   3'- -GC-GUCGGCC----UAUGa-----CGUA-GCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 48077 0.67 0.655409
Target:  5'- gGguGCCGGGgaaGCUcgGCAgggagaGGCGCGAg -3'
miRNA:   3'- gCguCGGCCUa--UGA--CGUag----CUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 28932 0.67 0.687705
Target:  5'- cCGCcgaccuGCUGGAUcauCUGgAUCGAgCGCGAc -3'
miRNA:   3'- -GCGu-----CGGCCUAu--GACgUAGCU-GCGCU- -5'
24006 5' -55.8 NC_005262.1 + 17974 0.68 0.579758
Target:  5'- aCGCAgcGCCGGAagUGC-GCAcguucuUCGACGUGGc -3'
miRNA:   3'- -GCGU--CGGCCU--AUGaCGU------AGCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 30045 0.68 0.590507
Target:  5'- aGCAGCgGGcaagaccgacgAUGCUGCcggCGACGaCGAc -3'
miRNA:   3'- gCGUCGgCC-----------UAUGACGua-GCUGC-GCU- -5'
24006 5' -55.8 NC_005262.1 + 6144 0.68 0.590507
Target:  5'- gCGCGGCCGGGauuuUGCUG-AUCGAgaucgucaCGCGc -3'
miRNA:   3'- -GCGUCGGCCU----AUGACgUAGCU--------GCGCu -5'
24006 5' -55.8 NC_005262.1 + 24209 0.68 0.612098
Target:  5'- gGCAGCCGcGAcGCUGCGcCGgcACGcCGAu -3'
miRNA:   3'- gCGUCGGC-CUaUGACGUaGC--UGC-GCU- -5'
24006 5' -55.8 NC_005262.1 + 43929 0.68 0.620757
Target:  5'- cCGCGGCCGacuacaacacGCUGCGcgaCGACGUGAg -3'
miRNA:   3'- -GCGUCGGCcua-------UGACGUa--GCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 16739 0.68 0.633756
Target:  5'- gGCAGCaCGGGU-CUGCGaugUgGGCGCa- -3'
miRNA:   3'- gCGUCG-GCCUAuGACGU---AgCUGCGcu -5'
24006 5' -55.8 NC_005262.1 + 24345 0.68 0.633756
Target:  5'- uGCGGCU-----CUGCGUCGGCGCGc -3'
miRNA:   3'- gCGUCGGccuauGACGUAGCUGCGCu -5'
24006 5' -55.8 NC_005262.1 + 6456 0.68 0.590507
Target:  5'- gGCu-CCGGcgagACgccgGCAUCGACGCGGg -3'
miRNA:   3'- gCGucGGCCua--UGa---CGUAGCUGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.