miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24006 5' -55.8 NC_005262.1 + 30045 0.68 0.590507
Target:  5'- aGCAGCgGGcaagaccgacgAUGCUGCcggCGACGaCGAc -3'
miRNA:   3'- gCGUCGgCC-----------UAUGACGua-GCUGC-GCU- -5'
24006 5' -55.8 NC_005262.1 + 24345 0.68 0.633756
Target:  5'- uGCGGCU-----CUGCGUCGGCGCGc -3'
miRNA:   3'- gCGUCGGccuauGACGUAGCUGCGCu -5'
24006 5' -55.8 NC_005262.1 + 43929 0.68 0.620757
Target:  5'- cCGCGGCCGacuacaacacGCUGCGcgaCGACGUGAg -3'
miRNA:   3'- -GCGUCGGCcua-------UGACGUa--GCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 24209 0.68 0.612098
Target:  5'- gGCAGCCGcGAcGCUGCGcCGgcACGcCGAu -3'
miRNA:   3'- gCGUCGGC-CUaUGACGUaGC--UGC-GCU- -5'
24006 5' -55.8 NC_005262.1 + 6456 0.68 0.590507
Target:  5'- gGCu-CCGGcgagACgccgGCAUCGACGCGGg -3'
miRNA:   3'- gCGucGGCCua--UGa---CGUAGCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 16739 0.68 0.633756
Target:  5'- gGCAGCaCGGGU-CUGCGaugUgGGCGCa- -3'
miRNA:   3'- gCGUCG-GCCUAuGACGU---AgCUGCGcu -5'
24006 5' -55.8 NC_005262.1 + 6144 0.68 0.590507
Target:  5'- gCGCGGCCGGGauuuUGCUG-AUCGAgaucgucaCGCGc -3'
miRNA:   3'- -GCGUCGGCCU----AUGACgUAGCU--------GCGCu -5'
24006 5' -55.8 NC_005262.1 + 55498 0.69 0.537259
Target:  5'- -cCAGCCGGcgcucgaGCUGC-UCGAUGCGGc -3'
miRNA:   3'- gcGUCGGCCua-----UGACGuAGCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 18056 0.69 0.558394
Target:  5'- gCGCAcuuCCGGc-GCUGCGUCcGAUGCGAu -3'
miRNA:   3'- -GCGUc--GGCCuaUGACGUAG-CUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 1134 0.69 0.541465
Target:  5'- uGCGGCCGcugcgggcuucGAUGCUGCcgCGcgggcuugccauccuGCGCGGa -3'
miRNA:   3'- gCGUCGGC-----------CUAUGACGuaGC---------------UGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 53784 0.69 0.558394
Target:  5'- aCGCGGCCGGGUuCUGCGcgccCGGC-UGAu -3'
miRNA:   3'- -GCGUCGGCCUAuGACGUa---GCUGcGCU- -5'
24006 5' -55.8 NC_005262.1 + 56277 0.69 0.552027
Target:  5'- gGUAGUCGGAUGCcGCAUgguagucggcgaucaCGGCGuCGAu -3'
miRNA:   3'- gCGUCGGCCUAUGaCGUA---------------GCUGC-GCU- -5'
24006 5' -55.8 NC_005262.1 + 16553 0.69 0.547794
Target:  5'- gGCAGCgGGAUACgUGCGauuUCGACuCGu -3'
miRNA:   3'- gCGUCGgCCUAUG-ACGU---AGCUGcGCu -5'
24006 5' -55.8 NC_005262.1 + 44805 0.69 0.537259
Target:  5'- uCGCGGCCGa--GCUGCAuuuccUCGcGCGCGGc -3'
miRNA:   3'- -GCGUCGGCcuaUGACGU-----AGC-UGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 43834 0.69 0.526794
Target:  5'- cCGCgGGCCGGccgcgcgcggcgGUGCgccgGCAggaccUCGGCGCGAu -3'
miRNA:   3'- -GCG-UCGGCC------------UAUGa---CGU-----AGCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 7527 0.69 0.526794
Target:  5'- gGCAGguUCGGcgGC-GCGUCGGCGCGc -3'
miRNA:   3'- gCGUC--GGCCuaUGaCGUAGCUGCGCu -5'
24006 5' -55.8 NC_005262.1 + 19299 0.69 0.526794
Target:  5'- uCGCAGCCGacGUGCU-CggCGAUGCGAg -3'
miRNA:   3'- -GCGUCGGCc-UAUGAcGuaGCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 8270 0.7 0.516406
Target:  5'- aGCGGCCgaGGAaGCUGCccgcGUCGcuCGCGAg -3'
miRNA:   3'- gCGUCGG--CCUaUGACG----UAGCu-GCGCU- -5'
24006 5' -55.8 NC_005262.1 + 11867 0.7 0.465827
Target:  5'- cCGCuGUCGGcgACgUGUAUCG-CGCGAa -3'
miRNA:   3'- -GCGuCGGCCuaUG-ACGUAGCuGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 35814 0.7 0.49487
Target:  5'- aCGCgaacagcaucaugGGCCGGA-GCgGCGUCGGCGCc- -3'
miRNA:   3'- -GCG-------------UCGGCCUaUGaCGUAGCUGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.