Results 21 - 40 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24006 | 5' | -55.8 | NC_005262.1 | + | 34148 | 0.7 | 0.489803 |
Target: 5'- uGcCAGuCCGGGUucuggucgucgagcaACUGCcgAUCGACGCGGc -3' miRNA: 3'- gC-GUC-GGCCUA---------------UGACG--UAGCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 35814 | 0.7 | 0.49487 |
Target: 5'- aCGCgaacagcaucaugGGCCGGA-GCgGCGUCGGCGCc- -3' miRNA: 3'- -GCG-------------UCGGCCUaUGaCGUAGCUGCGcu -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 11867 | 0.7 | 0.465827 |
Target: 5'- cCGCuGUCGGcgACgUGUAUCG-CGCGAa -3' miRNA: 3'- -GCGuCGGCCuaUG-ACGUAGCuGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 8270 | 0.7 | 0.516406 |
Target: 5'- aGCGGCCgaGGAaGCUGCccgcGUCGcuCGCGAg -3' miRNA: 3'- gCGUCGG--CCUaUGACG----UAGCu-GCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 53784 | 0.69 | 0.558394 |
Target: 5'- aCGCGGCCGGGUuCUGCGcgccCGGC-UGAu -3' miRNA: 3'- -GCGUCGGCCUAuGACGUa---GCUGcGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 18056 | 0.69 | 0.558394 |
Target: 5'- gCGCAcuuCCGGc-GCUGCGUCcGAUGCGAu -3' miRNA: 3'- -GCGUc--GGCCuaUGACGUAG-CUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 55498 | 0.69 | 0.537259 |
Target: 5'- -cCAGCCGGcgcucgaGCUGC-UCGAUGCGGc -3' miRNA: 3'- gcGUCGGCCua-----UGACGuAGCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 44805 | 0.69 | 0.537259 |
Target: 5'- uCGCGGCCGa--GCUGCAuuuccUCGcGCGCGGc -3' miRNA: 3'- -GCGUCGGCcuaUGACGU-----AGC-UGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 19299 | 0.69 | 0.526794 |
Target: 5'- uCGCAGCCGacGUGCU-CggCGAUGCGAg -3' miRNA: 3'- -GCGUCGGCc-UAUGAcGuaGCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 56277 | 0.69 | 0.552027 |
Target: 5'- gGUAGUCGGAUGCcGCAUgguagucggcgaucaCGGCGuCGAu -3' miRNA: 3'- gCGUCGGCCUAUGaCGUA---------------GCUGC-GCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 16553 | 0.69 | 0.547794 |
Target: 5'- gGCAGCgGGAUACgUGCGauuUCGACuCGu -3' miRNA: 3'- gCGUCGgCCUAUG-ACGU---AGCUGcGCu -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 7527 | 0.69 | 0.526794 |
Target: 5'- gGCAGguUCGGcgGC-GCGUCGGCGCGc -3' miRNA: 3'- gCGUC--GGCCuaUGaCGUAGCUGCGCu -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 43834 | 0.69 | 0.526794 |
Target: 5'- cCGCgGGCCGGccgcgcgcggcgGUGCgccgGCAggaccUCGGCGCGAu -3' miRNA: 3'- -GCG-UCGGCC------------UAUGa---CGU-----AGCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 1134 | 0.69 | 0.541465 |
Target: 5'- uGCGGCCGcugcgggcuucGAUGCUGCcgCGcgggcuugccauccuGCGCGGa -3' miRNA: 3'- gCGUCGGC-----------CUAUGACGuaGC---------------UGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 17974 | 0.68 | 0.579758 |
Target: 5'- aCGCAgcGCCGGAagUGC-GCAcguucuUCGACGUGGc -3' miRNA: 3'- -GCGU--CGGCCU--AUGaCGU------AGCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 6144 | 0.68 | 0.590507 |
Target: 5'- gCGCGGCCGGGauuuUGCUG-AUCGAgaucgucaCGCGc -3' miRNA: 3'- -GCGUCGGCCU----AUGACgUAGCU--------GCGCu -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 24209 | 0.68 | 0.612098 |
Target: 5'- gGCAGCCGcGAcGCUGCGcCGgcACGcCGAu -3' miRNA: 3'- gCGUCGGC-CUaUGACGUaGC--UGC-GCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 6456 | 0.68 | 0.590507 |
Target: 5'- gGCu-CCGGcgagACgccgGCAUCGACGCGGg -3' miRNA: 3'- gCGucGGCCua--UGa---CGUAGCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 24345 | 0.68 | 0.633756 |
Target: 5'- uGCGGCU-----CUGCGUCGGCGCGc -3' miRNA: 3'- gCGUCGGccuauGACGUAGCUGCGCu -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 16739 | 0.68 | 0.633756 |
Target: 5'- gGCAGCaCGGGU-CUGCGaugUgGGCGCa- -3' miRNA: 3'- gCGUCG-GCCUAuGACGU---AgCUGCGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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