miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24006 5' -55.8 NC_005262.1 + 23047 1.09 0.001051
Target:  5'- aCGCAGCCGGAUACUGCAUCGACGCGAu -3'
miRNA:   3'- -GCGUCGGCCUAUGACGUAGCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 60235 0.77 0.183699
Target:  5'- gGCGGCCGGGUACUucgcccaugccuucGCcgCGACGCu- -3'
miRNA:   3'- gCGUCGGCCUAUGA--------------CGuaGCUGCGcu -5'
24006 5' -55.8 NC_005262.1 + 39301 0.76 0.211213
Target:  5'- gGCAGCuCGGA--CUGacCAUCGACGCGAa -3'
miRNA:   3'- gCGUCG-GCCUauGAC--GUAGCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 16681 0.74 0.279658
Target:  5'- cCGCAGCCGGGcgaggAgUGCAUCGucACGCa- -3'
miRNA:   3'- -GCGUCGGCCUa----UgACGUAGC--UGCGcu -5'
24006 5' -55.8 NC_005262.1 + 48116 0.74 0.279658
Target:  5'- gCGCGGCCGGcUGCUGCGUggucuggguguUGGuCGCGGg -3'
miRNA:   3'- -GCGUCGGCCuAUGACGUA-----------GCU-GCGCU- -5'
24006 5' -55.8 NC_005262.1 + 50732 0.74 0.293852
Target:  5'- uGgAGCCGGuUGCUGC-UCGGCgGCGAc -3'
miRNA:   3'- gCgUCGGCCuAUGACGuAGCUG-CGCU- -5'
24006 5' -55.8 NC_005262.1 + 55237 0.74 0.301157
Target:  5'- uCGCGGCCGGGUAgaGC-UCGAggaauucgcgUGCGAa -3'
miRNA:   3'- -GCGUCGGCCUAUgaCGuAGCU----------GCGCU- -5'
24006 5' -55.8 NC_005262.1 + 63288 0.74 0.301157
Target:  5'- uGaCGGCCGGcUGCUggcucgGCGUCGACGUGGa -3'
miRNA:   3'- gC-GUCGGCCuAUGA------CGUAGCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 27830 0.74 0.316185
Target:  5'- gCGCGGCCGGucugacuucaagGUGCUGCcgCGuCGCa- -3'
miRNA:   3'- -GCGUCGGCC------------UAUGACGuaGCuGCGcu -5'
24006 5' -55.8 NC_005262.1 + 46581 0.72 0.37059
Target:  5'- uCGCGGUCGGAgUgcucaugucgacggGCUGCGUCGugGCc- -3'
miRNA:   3'- -GCGUCGGCCU-A--------------UGACGUAGCugCGcu -5'
24006 5' -55.8 NC_005262.1 + 15143 0.72 0.37317
Target:  5'- uCGCGGCCGGcguCga-GUCGGCGCGGa -3'
miRNA:   3'- -GCGUCGGCCuauGacgUAGCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 43913 0.72 0.37317
Target:  5'- gCGCGGCCGGcccgcgGCcGUGUCGcCGCGAu -3'
miRNA:   3'- -GCGUCGGCCua----UGaCGUAGCuGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 58876 0.72 0.39964
Target:  5'- gCGCAGCCcgcgcguuGGcUGCUGCcgCGcuGCGCGAu -3'
miRNA:   3'- -GCGUCGG--------CCuAUGACGuaGC--UGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 58961 0.71 0.417012
Target:  5'- aGCAGCCaacgcgcGGA-GCUGCGcCGGCGUGAc -3'
miRNA:   3'- gCGUCGG-------CCUaUGACGUaGCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 15278 0.71 0.417939
Target:  5'- aCGCGGCaUGGAUGCUGCcagucGUCGAuucgcCGCGc -3'
miRNA:   3'- -GCGUCG-GCCUAUGACG-----UAGCU-----GCGCu -5'
24006 5' -55.8 NC_005262.1 + 10567 0.71 0.417939
Target:  5'- gCGCAGCCGcagcGUACcGCGgagcagcgCGGCGCGAg -3'
miRNA:   3'- -GCGUCGGCc---UAUGaCGUa-------GCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 33317 0.71 0.44632
Target:  5'- cCGUcgAGUCGGAcgcaACUGCGUCGcuGCGCGGc -3'
miRNA:   3'- -GCG--UCGGCCUa---UGACGUAGC--UGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 49895 0.71 0.456017
Target:  5'- gCGCGGCCGaucgggccggacGGUGCagggGCGUCcGGCGCGGc -3'
miRNA:   3'- -GCGUCGGC------------CUAUGa---CGUAG-CUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 11867 0.7 0.465827
Target:  5'- cCGCuGUCGGcgACgUGUAUCG-CGCGAa -3'
miRNA:   3'- -GCGuCGGCCuaUG-ACGUAGCuGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 49851 0.7 0.471765
Target:  5'- aGCGGCCGGAgccucgggcgcggGCgccgccgGCGUCGGUGCGGc -3'
miRNA:   3'- gCGUCGGCCUa------------UGa------CGUAGCUGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.