Results 41 - 60 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24006 | 5' | -55.8 | NC_005262.1 | + | 48632 | 0.68 | 0.60129 |
Target: 5'- aGCGGcCCGGcuccUGC-GCAUCGAgaCGCGAu -3' miRNA: 3'- gCGUC-GGCCu---AUGaCGUAGCU--GCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 16951 | 0.68 | 0.612098 |
Target: 5'- gCGCGGCCGGGcgcCUGCAUCaguuGAUGauCGAa -3' miRNA: 3'- -GCGUCGGCCUau-GACGUAG----CUGC--GCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 24209 | 0.68 | 0.612098 |
Target: 5'- gGCAGCCGcGAcGCUGCGcCGgcACGcCGAu -3' miRNA: 3'- gCGUCGGC-CUaUGACGUaGC--UGC-GCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 43929 | 0.68 | 0.620757 |
Target: 5'- cCGCGGCCGacuacaacacGCUGCGcgaCGACGUGAg -3' miRNA: 3'- -GCGUCGGCcua-------UGACGUa--GCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 13942 | 0.68 | 0.622923 |
Target: 5'- aCGaCGGCCGG-UGCUGCGccaUCGAguCGcCGAa -3' miRNA: 3'- -GC-GUCGGCCuAUGACGU---AGCU--GC-GCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 1879 | 0.68 | 0.622923 |
Target: 5'- cCGCauugacuggauGGgCGGAUAugucugucugacCUGCAUCGAuCGCGAg -3' miRNA: 3'- -GCG-----------UCgGCCUAU------------GACGUAGCU-GCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 24345 | 0.68 | 0.633756 |
Target: 5'- uGCGGCU-----CUGCGUCGGCGCGc -3' miRNA: 3'- gCGUCGGccuauGACGUAGCUGCGCu -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 50195 | 0.68 | 0.633756 |
Target: 5'- gCGCucGGCCGGcuuCUGUucgcgCGGCGCGGg -3' miRNA: 3'- -GCG--UCGGCCuauGACGua---GCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 16739 | 0.68 | 0.633756 |
Target: 5'- gGCAGCaCGGGU-CUGCGaugUgGGCGCa- -3' miRNA: 3'- gCGUCG-GCCUAuGACGU---AgCUGCGcu -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 2329 | 0.67 | 0.648918 |
Target: 5'- aCGCGGCCcGAgACUuugcccuuacagggaGCGgcuUCGACGCGAu -3' miRNA: 3'- -GCGUCGGcCUaUGA---------------CGU---AGCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 4681 | 0.67 | 0.655409 |
Target: 5'- cCGCGGCCGGAUcgggccGCgGCAUCcagucguuGCGCa- -3' miRNA: 3'- -GCGUCGGCCUA------UGaCGUAGc-------UGCGcu -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 48077 | 0.67 | 0.655409 |
Target: 5'- gGguGCCGGGgaaGCUcgGCAgggagaGGCGCGAg -3' miRNA: 3'- gCguCGGCCUa--UGA--CGUag----CUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 192 | 0.67 | 0.655409 |
Target: 5'- uCGcCGGCCGGugacAUGCgcagaaGCGUgCGGCGCGGc -3' miRNA: 3'- -GC-GUCGGCC----UAUGa-----CGUA-GCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 26498 | 0.67 | 0.666209 |
Target: 5'- aGCAGCgGGA-AC-GCGUCG-CGCGu -3' miRNA: 3'- gCGUCGgCCUaUGaCGUAGCuGCGCu -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 49883 | 0.67 | 0.676978 |
Target: 5'- aGcCGGCCGGAaacggucgAUUGuCGUCGGCGaCGAc -3' miRNA: 3'- gC-GUCGGCCUa-------UGAC-GUAGCUGC-GCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 48039 | 0.67 | 0.676978 |
Target: 5'- aGCAGCCGGccGCgcccgcaagcGCGUCGGuCGCa- -3' miRNA: 3'- gCGUCGGCCuaUGa---------CGUAGCU-GCGcu -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 46778 | 0.67 | 0.687705 |
Target: 5'- uGCGcGCgCGGcgcugACUGCAUCGGCGgGc -3' miRNA: 3'- gCGU-CG-GCCua---UGACGUAGCUGCgCu -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 28932 | 0.67 | 0.687705 |
Target: 5'- cCGCcgaccuGCUGGAUcauCUGgAUCGAgCGCGAc -3' miRNA: 3'- -GCGu-----CGGCCUAu--GACgUAGCU-GCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 53903 | 0.67 | 0.687705 |
Target: 5'- uCGUGGaCGGGU-CUGCG-CGACGCGc -3' miRNA: 3'- -GCGUCgGCCUAuGACGUaGCUGCGCu -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 30886 | 0.67 | 0.687705 |
Target: 5'- aGCGGCCGGAUGgUGaCGcCGcuCGCGc -3' miRNA: 3'- gCGUCGGCCUAUgAC-GUaGCu-GCGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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