Results 61 - 80 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24006 | 5' | -55.8 | NC_005262.1 | + | 34148 | 0.7 | 0.489803 |
Target: 5'- uGcCAGuCCGGGUucuggucgucgagcaACUGCcgAUCGACGCGGc -3' miRNA: 3'- gC-GUC-GGCCUA---------------UGACG--UAGCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 49851 | 0.7 | 0.471765 |
Target: 5'- aGCGGCCGGAgccucgggcgcggGCgccgccgGCGUCGGUGCGGc -3' miRNA: 3'- gCGUCGGCCUa------------UGa------CGUAGCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 11867 | 0.7 | 0.465827 |
Target: 5'- cCGCuGUCGGcgACgUGUAUCG-CGCGAa -3' miRNA: 3'- -GCGuCGGCCuaUG-ACGUAGCuGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 49895 | 0.71 | 0.456017 |
Target: 5'- gCGCGGCCGaucgggccggacGGUGCagggGCGUCcGGCGCGGc -3' miRNA: 3'- -GCGUCGGC------------CUAUGa---CGUAG-CUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 33317 | 0.71 | 0.44632 |
Target: 5'- cCGUcgAGUCGGAcgcaACUGCGUCGcuGCGCGGc -3' miRNA: 3'- -GCG--UCGGCCUa---UGACGUAGC--UGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 10567 | 0.71 | 0.417939 |
Target: 5'- gCGCAGCCGcagcGUACcGCGgagcagcgCGGCGCGAg -3' miRNA: 3'- -GCGUCGGCc---UAUGaCGUa-------GCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 15278 | 0.71 | 0.417939 |
Target: 5'- aCGCGGCaUGGAUGCUGCcagucGUCGAuucgcCGCGc -3' miRNA: 3'- -GCGUCG-GCCUAUGACG-----UAGCU-----GCGCu -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 58961 | 0.71 | 0.417012 |
Target: 5'- aGCAGCCaacgcgcGGA-GCUGCGcCGGCGUGAc -3' miRNA: 3'- gCGUCGG-------CCUaUGACGUaGCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 58876 | 0.72 | 0.39964 |
Target: 5'- gCGCAGCCcgcgcguuGGcUGCUGCcgCGcuGCGCGAu -3' miRNA: 3'- -GCGUCGG--------CCuAUGACGuaGC--UGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 15143 | 0.72 | 0.37317 |
Target: 5'- uCGCGGCCGGcguCga-GUCGGCGCGGa -3' miRNA: 3'- -GCGUCGGCCuauGacgUAGCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 43913 | 0.72 | 0.37317 |
Target: 5'- gCGCGGCCGGcccgcgGCcGUGUCGcCGCGAu -3' miRNA: 3'- -GCGUCGGCCua----UGaCGUAGCuGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 46581 | 0.72 | 0.37059 |
Target: 5'- uCGCGGUCGGAgUgcucaugucgacggGCUGCGUCGugGCc- -3' miRNA: 3'- -GCGUCGGCCU-A--------------UGACGUAGCugCGcu -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 27830 | 0.74 | 0.316185 |
Target: 5'- gCGCGGCCGGucugacuucaagGUGCUGCcgCGuCGCa- -3' miRNA: 3'- -GCGUCGGCC------------UAUGACGuaGCuGCGcu -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 55237 | 0.74 | 0.301157 |
Target: 5'- uCGCGGCCGGGUAgaGC-UCGAggaauucgcgUGCGAa -3' miRNA: 3'- -GCGUCGGCCUAUgaCGuAGCU----------GCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 63288 | 0.74 | 0.301157 |
Target: 5'- uGaCGGCCGGcUGCUggcucgGCGUCGACGUGGa -3' miRNA: 3'- gC-GUCGGCCuAUGA------CGUAGCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 50732 | 0.74 | 0.293852 |
Target: 5'- uGgAGCCGGuUGCUGC-UCGGCgGCGAc -3' miRNA: 3'- gCgUCGGCCuAUGACGuAGCUG-CGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 48116 | 0.74 | 0.279658 |
Target: 5'- gCGCGGCCGGcUGCUGCGUggucuggguguUGGuCGCGGg -3' miRNA: 3'- -GCGUCGGCCuAUGACGUA-----------GCU-GCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 16681 | 0.74 | 0.279658 |
Target: 5'- cCGCAGCCGGGcgaggAgUGCAUCGucACGCa- -3' miRNA: 3'- -GCGUCGGCCUa----UgACGUAGC--UGCGcu -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 39301 | 0.76 | 0.211213 |
Target: 5'- gGCAGCuCGGA--CUGacCAUCGACGCGAa -3' miRNA: 3'- gCGUCG-GCCUauGAC--GUAGCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 60235 | 0.77 | 0.183699 |
Target: 5'- gGCGGCCGGGUACUucgcccaugccuucGCcgCGACGCu- -3' miRNA: 3'- gCGUCGGCCUAUGA--------------CGuaGCUGCGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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