miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24006 5' -55.8 NC_005262.1 + 192 0.67 0.655409
Target:  5'- uCGcCGGCCGGugacAUGCgcagaaGCGUgCGGCGCGGc -3'
miRNA:   3'- -GC-GUCGGCC----UAUGa-----CGUA-GCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 1134 0.69 0.541465
Target:  5'- uGCGGCCGcugcgggcuucGAUGCUGCcgCGcgggcuugccauccuGCGCGGa -3'
miRNA:   3'- gCGUCGGC-----------CUAUGACGuaGC---------------UGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 1879 0.68 0.622923
Target:  5'- cCGCauugacuggauGGgCGGAUAugucugucugacCUGCAUCGAuCGCGAg -3'
miRNA:   3'- -GCG-----------UCgGCCUAU------------GACGUAGCU-GCGCU- -5'
24006 5' -55.8 NC_005262.1 + 2329 0.67 0.648918
Target:  5'- aCGCGGCCcGAgACUuugcccuuacagggaGCGgcuUCGACGCGAu -3'
miRNA:   3'- -GCGUCGGcCUaUGA---------------CGU---AGCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 4681 0.67 0.655409
Target:  5'- cCGCGGCCGGAUcgggccGCgGCAUCcagucguuGCGCa- -3'
miRNA:   3'- -GCGUCGGCCUA------UGaCGUAGc-------UGCGcu -5'
24006 5' -55.8 NC_005262.1 + 5141 0.66 0.708995
Target:  5'- gGCGGCgCuGAUcCUGC-UCGGCGCGc -3'
miRNA:   3'- gCGUCG-GcCUAuGACGuAGCUGCGCu -5'
24006 5' -55.8 NC_005262.1 + 5198 0.66 0.704758
Target:  5'- gCGCGGCCGGcgcgaccgagggcGUAucCUGCAcgaucgccguggcgUCGACGCc- -3'
miRNA:   3'- -GCGUCGGCC-------------UAU--GACGU--------------AGCUGCGcu -5'
24006 5' -55.8 NC_005262.1 + 5423 0.66 0.740355
Target:  5'- aCGCgAGCCGGGUcuuuucgaUGUccCGGCGCGGc -3'
miRNA:   3'- -GCG-UCGGCCUAug------ACGuaGCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 6144 0.68 0.590507
Target:  5'- gCGCGGCCGGGauuuUGCUG-AUCGAgaucgucaCGCGc -3'
miRNA:   3'- -GCGUCGGCCU----AUGACgUAGCU--------GCGCu -5'
24006 5' -55.8 NC_005262.1 + 6456 0.68 0.590507
Target:  5'- gGCu-CCGGcgagACgccgGCAUCGACGCGGg -3'
miRNA:   3'- gCGucGGCCua--UGa---CGUAGCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 7527 0.69 0.526794
Target:  5'- gGCAGguUCGGcgGC-GCGUCGGCGCGc -3'
miRNA:   3'- gCGUC--GGCCuaUGaCGUAGCUGCGCu -5'
24006 5' -55.8 NC_005262.1 + 8270 0.7 0.516406
Target:  5'- aGCGGCCgaGGAaGCUGCccgcGUCGcuCGCGAg -3'
miRNA:   3'- gCGUCGG--CCUaUGACG----UAGCu-GCGCU- -5'
24006 5' -55.8 NC_005262.1 + 10520 0.66 0.729993
Target:  5'- aGCAGCgCGGggGCggccgaaacgGCuaugcCGACGCGAc -3'
miRNA:   3'- gCGUCG-GCCuaUGa---------CGua---GCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 10567 0.71 0.417939
Target:  5'- gCGCAGCCGcagcGUACcGCGgagcagcgCGGCGCGAg -3'
miRNA:   3'- -GCGUCGGCc---UAUGaCGUa-------GCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 11126 0.66 0.708995
Target:  5'- uGCGGCCuGuUGCUGCGcgCGgucuuGCGCGAc -3'
miRNA:   3'- gCGUCGGcCuAUGACGUa-GC-----UGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 11496 0.66 0.729993
Target:  5'- gGCGGcCCGGcgcgGCgcgGCuUCGGCGUGGa -3'
miRNA:   3'- gCGUC-GGCCua--UGa--CGuAGCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 11867 0.7 0.465827
Target:  5'- cCGCuGUCGGcgACgUGUAUCG-CGCGAa -3'
miRNA:   3'- -GCGuCGGCCuaUG-ACGUAGCuGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 12354 0.66 0.750611
Target:  5'- uCGcCGGCCGcgaucgacaGGUGCccgacCAUCGACGCGAc -3'
miRNA:   3'- -GC-GUCGGC---------CUAUGac---GUAGCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 13942 0.68 0.622923
Target:  5'- aCGaCGGCCGG-UGCUGCGccaUCGAguCGcCGAa -3'
miRNA:   3'- -GC-GUCGGCCuAUGACGU---AGCU--GC-GCU- -5'
24006 5' -55.8 NC_005262.1 + 15143 0.72 0.37317
Target:  5'- uCGCGGCCGGcguCga-GUCGGCGCGGa -3'
miRNA:   3'- -GCGUCGGCCuauGacgUAGCUGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.