miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24006 5' -55.8 NC_005262.1 + 15278 0.71 0.417939
Target:  5'- aCGCGGCaUGGAUGCUGCcagucGUCGAuucgcCGCGc -3'
miRNA:   3'- -GCGUCG-GCCUAUGACG-----UAGCU-----GCGCu -5'
24006 5' -55.8 NC_005262.1 + 16553 0.69 0.547794
Target:  5'- gGCAGCgGGAUACgUGCGauuUCGACuCGu -3'
miRNA:   3'- gCGUCGgCCUAUG-ACGU---AGCUGcGCu -5'
24006 5' -55.8 NC_005262.1 + 16681 0.74 0.279658
Target:  5'- cCGCAGCCGGGcgaggAgUGCAUCGucACGCa- -3'
miRNA:   3'- -GCGUCGGCCUa----UgACGUAGC--UGCGcu -5'
24006 5' -55.8 NC_005262.1 + 16739 0.68 0.633756
Target:  5'- gGCAGCaCGGGU-CUGCGaugUgGGCGCa- -3'
miRNA:   3'- gCGUCG-GCCUAuGACGU---AgCUGCGcu -5'
24006 5' -55.8 NC_005262.1 + 16951 0.68 0.612098
Target:  5'- gCGCGGCCGGGcgcCUGCAUCaguuGAUGauCGAa -3'
miRNA:   3'- -GCGUCGGCCUau-GACGUAG----CUGC--GCU- -5'
24006 5' -55.8 NC_005262.1 + 17974 0.68 0.579758
Target:  5'- aCGCAgcGCCGGAagUGC-GCAcguucuUCGACGUGGc -3'
miRNA:   3'- -GCGU--CGGCCU--AUGaCGU------AGCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 18056 0.69 0.558394
Target:  5'- gCGCAcuuCCGGc-GCUGCGUCcGAUGCGAu -3'
miRNA:   3'- -GCGUc--GGCCuaUGACGUAG-CUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 18978 0.66 0.740355
Target:  5'- cCGUGGUCGGG-ACUGgAUgCGGCGCa- -3'
miRNA:   3'- -GCGUCGGCCUaUGACgUA-GCUGCGcu -5'
24006 5' -55.8 NC_005262.1 + 19299 0.69 0.526794
Target:  5'- uCGCAGCCGacGUGCU-CggCGAUGCGAg -3'
miRNA:   3'- -GCGUCGGCc-UAUGAcGuaGCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 20957 0.7 0.49284
Target:  5'- gGCGGCUGGGUAacggaguugacugcCUGCGUCGuguagaGCGGg -3'
miRNA:   3'- gCGUCGGCCUAU--------------GACGUAGCug----CGCU- -5'
24006 5' -55.8 NC_005262.1 + 21863 0.68 0.590507
Target:  5'- aGCAuGCCGaGAUGCUugGCGacgUUGACGCGu -3'
miRNA:   3'- gCGU-CGGC-CUAUGA--CGU---AGCUGCGCu -5'
24006 5' -55.8 NC_005262.1 + 22304 0.67 0.687705
Target:  5'- gCGCGGCCGuGA-GCU-UGUCGAgCGCGAg -3'
miRNA:   3'- -GCGUCGGC-CUaUGAcGUAGCU-GCGCU- -5'
24006 5' -55.8 NC_005262.1 + 23047 1.09 0.001051
Target:  5'- aCGCAGCCGGAUACUGCAUCGACGCGAu -3'
miRNA:   3'- -GCGUCGGCCUAUGACGUAGCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 24209 0.68 0.612098
Target:  5'- gGCAGCCGcGAcGCUGCGcCGgcACGcCGAu -3'
miRNA:   3'- gCGUCGGC-CUaUGACGUaGC--UGC-GCU- -5'
24006 5' -55.8 NC_005262.1 + 24299 0.66 0.740355
Target:  5'- aCGCucGCCGcccuGAUGCUucucGCgaugGUCGGCGCGAu -3'
miRNA:   3'- -GCGu-CGGC----CUAUGA----CG----UAGCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 24345 0.68 0.633756
Target:  5'- uGCGGCU-----CUGCGUCGGCGCGc -3'
miRNA:   3'- gCGUCGGccuauGACGUAGCUGCGCu -5'
24006 5' -55.8 NC_005262.1 + 26498 0.67 0.666209
Target:  5'- aGCAGCgGGA-AC-GCGUCG-CGCGu -3'
miRNA:   3'- gCGUCGgCCUaUGaCGUAGCuGCGCu -5'
24006 5' -55.8 NC_005262.1 + 27830 0.74 0.316185
Target:  5'- gCGCGGCCGGucugacuucaagGUGCUGCcgCGuCGCa- -3'
miRNA:   3'- -GCGUCGGCC------------UAUGACGuaGCuGCGcu -5'
24006 5' -55.8 NC_005262.1 + 28932 0.67 0.687705
Target:  5'- cCGCcgaccuGCUGGAUcauCUGgAUCGAgCGCGAc -3'
miRNA:   3'- -GCGu-----CGGCCUAu--GACgUAGCU-GCGCU- -5'
24006 5' -55.8 NC_005262.1 + 28984 0.68 0.60129
Target:  5'- uCGCGacGCCGGAcACUGCGUuCGuCGUGc -3'
miRNA:   3'- -GCGU--CGGCCUaUGACGUA-GCuGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.