miRNA display CGI


Results 41 - 60 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24006 5' -55.8 NC_005262.1 + 29521 0.66 0.729993
Target:  5'- cCGCAGCCuugcGGGccuucgccUGCUGCuccUCGAgcguCGCGAu -3'
miRNA:   3'- -GCGUCGG----CCU--------AUGACGu--AGCU----GCGCU- -5'
24006 5' -55.8 NC_005262.1 + 30045 0.68 0.590507
Target:  5'- aGCAGCgGGcaagaccgacgAUGCUGCcggCGACGaCGAc -3'
miRNA:   3'- gCGUCGgCC-----------UAUGACGua-GCUGC-GCU- -5'
24006 5' -55.8 NC_005262.1 + 30886 0.67 0.687705
Target:  5'- aGCGGCCGGAUGgUGaCGcCGcuCGCGc -3'
miRNA:   3'- gCGUCGGCCUAUgAC-GUaGCu-GCGCu -5'
24006 5' -55.8 NC_005262.1 + 31922 0.66 0.740355
Target:  5'- aCGC-GCCGGAcgucgccaccUGCUGUAcggcggUGugGCGAc -3'
miRNA:   3'- -GCGuCGGCCU----------AUGACGUa-----GCugCGCU- -5'
24006 5' -55.8 NC_005262.1 + 33317 0.71 0.44632
Target:  5'- cCGUcgAGUCGGAcgcaACUGCGUCGcuGCGCGGc -3'
miRNA:   3'- -GCG--UCGGCCUa---UGACGUAGC--UGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 34148 0.7 0.489803
Target:  5'- uGcCAGuCCGGGUucuggucgucgagcaACUGCcgAUCGACGCGGc -3'
miRNA:   3'- gC-GUC-GGCCUA---------------UGACG--UAGCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 34501 0.66 0.750611
Target:  5'- gGCGGCgCGcGAcuuCUGCGagaCGACGCGGc -3'
miRNA:   3'- gCGUCG-GC-CUau-GACGUa--GCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 35814 0.7 0.49487
Target:  5'- aCGCgaacagcaucaugGGCCGGA-GCgGCGUCGGCGCc- -3'
miRNA:   3'- -GCG-------------UCGGCCUaUGaCGUAGCUGCGcu -5'
24006 5' -55.8 NC_005262.1 + 39301 0.76 0.211213
Target:  5'- gGCAGCuCGGA--CUGacCAUCGACGCGAa -3'
miRNA:   3'- gCGUCG-GCCUauGAC--GUAGCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 43834 0.69 0.526794
Target:  5'- cCGCgGGCCGGccgcgcgcggcgGUGCgccgGCAggaccUCGGCGCGAu -3'
miRNA:   3'- -GCG-UCGGCC------------UAUGa---CGU-----AGCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 43913 0.72 0.37317
Target:  5'- gCGCGGCCGGcccgcgGCcGUGUCGcCGCGAu -3'
miRNA:   3'- -GCGUCGGCCua----UGaCGUAGCuGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 43929 0.68 0.620757
Target:  5'- cCGCGGCCGacuacaacacGCUGCGcgaCGACGUGAg -3'
miRNA:   3'- -GCGUCGGCcua-------UGACGUa--GCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 44805 0.69 0.537259
Target:  5'- uCGCGGCCGa--GCUGCAuuuccUCGcGCGCGGc -3'
miRNA:   3'- -GCGUCGGCcuaUGACGU-----AGC-UGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 46581 0.72 0.37059
Target:  5'- uCGCGGUCGGAgUgcucaugucgacggGCUGCGUCGugGCc- -3'
miRNA:   3'- -GCGUCGGCCU-A--------------UGACGUAGCugCGcu -5'
24006 5' -55.8 NC_005262.1 + 46756 0.66 0.719536
Target:  5'- cCGCcacGCCGGucGUACagGCggCGACGCGc -3'
miRNA:   3'- -GCGu--CGGCC--UAUGa-CGuaGCUGCGCu -5'
24006 5' -55.8 NC_005262.1 + 46778 0.67 0.687705
Target:  5'- uGCGcGCgCGGcgcugACUGCAUCGGCGgGc -3'
miRNA:   3'- gCGU-CG-GCCua---UGACGUAGCUGCgCu -5'
24006 5' -55.8 NC_005262.1 + 47747 0.66 0.708995
Target:  5'- gCGCcGCCGGccgcgGCgaacccgGCAUCG-CGCGGg -3'
miRNA:   3'- -GCGuCGGCCua---UGa------CGUAGCuGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 47825 0.67 0.700509
Target:  5'- cCGCGGCCGGcgGCgcaccagauacagGCGgcgagccgccgccCGGCGCGGu -3'
miRNA:   3'- -GCGUCGGCCuaUGa------------CGUa------------GCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 48039 0.67 0.676978
Target:  5'- aGCAGCCGGccGCgcccgcaagcGCGUCGGuCGCa- -3'
miRNA:   3'- gCGUCGGCCuaUGa---------CGUAGCU-GCGcu -5'
24006 5' -55.8 NC_005262.1 + 48077 0.67 0.655409
Target:  5'- gGguGCCGGGgaaGCUcgGCAgggagaGGCGCGAg -3'
miRNA:   3'- gCguCGGCCUa--UGA--CGUag----CUGCGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.