miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24006 5' -55.8 NC_005262.1 + 63288 0.74 0.301157
Target:  5'- uGaCGGCCGGcUGCUggcucgGCGUCGACGUGGa -3'
miRNA:   3'- gC-GUCGGCCuAUGA------CGUAGCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 61706 0.66 0.719536
Target:  5'- gGCGcGCCGGGUuc-GC-UCGGCGCGc -3'
miRNA:   3'- gCGU-CGGCCUAugaCGuAGCUGCGCu -5'
24006 5' -55.8 NC_005262.1 + 60235 0.77 0.183699
Target:  5'- gGCGGCCGGGUACUucgcccaugccuucGCcgCGACGCu- -3'
miRNA:   3'- gCGUCGGCCUAUGA--------------CGuaGCUGCGcu -5'
24006 5' -55.8 NC_005262.1 + 59045 0.66 0.729993
Target:  5'- gGCGGCCGG---CUGguUCGACuGCu- -3'
miRNA:   3'- gCGUCGGCCuauGACguAGCUG-CGcu -5'
24006 5' -55.8 NC_005262.1 + 58961 0.71 0.417012
Target:  5'- aGCAGCCaacgcgcGGA-GCUGCGcCGGCGUGAc -3'
miRNA:   3'- gCGUCGG-------CCUaUGACGUaGCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 58876 0.72 0.39964
Target:  5'- gCGCAGCCcgcgcguuGGcUGCUGCcgCGcuGCGCGAu -3'
miRNA:   3'- -GCGUCGG--------CCuAUGACGuaGC--UGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 56277 0.69 0.552027
Target:  5'- gGUAGUCGGAUGCcGCAUgguagucggcgaucaCGGCGuCGAu -3'
miRNA:   3'- gCGUCGGCCUAUGaCGUA---------------GCUGC-GCU- -5'
24006 5' -55.8 NC_005262.1 + 55498 0.69 0.537259
Target:  5'- -cCAGCCGGcgcucgaGCUGC-UCGAUGCGGc -3'
miRNA:   3'- gcGUCGGCCua-----UGACGuAGCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 55237 0.74 0.301157
Target:  5'- uCGCGGCCGGGUAgaGC-UCGAggaauucgcgUGCGAa -3'
miRNA:   3'- -GCGUCGGCCUAUgaCGuAGCU----------GCGCU- -5'
24006 5' -55.8 NC_005262.1 + 53903 0.67 0.687705
Target:  5'- uCGUGGaCGGGU-CUGCG-CGACGCGc -3'
miRNA:   3'- -GCGUCgGCCUAuGACGUaGCUGCGCu -5'
24006 5' -55.8 NC_005262.1 + 53784 0.69 0.558394
Target:  5'- aCGCGGCCGGGUuCUGCGcgccCGGC-UGAu -3'
miRNA:   3'- -GCGUCGGCCUAuGACGUa---GCUGcGCU- -5'
24006 5' -55.8 NC_005262.1 + 50961 0.67 0.698381
Target:  5'- aGCGcGCCGuGcgAUUGCGUCGGCaccuGCGGc -3'
miRNA:   3'- gCGU-CGGC-CuaUGACGUAGCUG----CGCU- -5'
24006 5' -55.8 NC_005262.1 + 50923 0.66 0.719536
Target:  5'- uGCGcGCgGGAUGCcaGCGUgcccgucucCGGCGCGAa -3'
miRNA:   3'- gCGU-CGgCCUAUGa-CGUA---------GCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 50732 0.74 0.293852
Target:  5'- uGgAGCCGGuUGCUGC-UCGGCgGCGAc -3'
miRNA:   3'- gCgUCGGCCuAUGACGuAGCUG-CGCU- -5'
24006 5' -55.8 NC_005262.1 + 50195 0.68 0.633756
Target:  5'- gCGCucGGCCGGcuuCUGUucgcgCGGCGCGGg -3'
miRNA:   3'- -GCG--UCGGCCuauGACGua---GCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 50086 0.66 0.729993
Target:  5'- gGC-GCCGGcgcgGCUuCAUCGGCGgGAg -3'
miRNA:   3'- gCGuCGGCCua--UGAcGUAGCUGCgCU- -5'
24006 5' -55.8 NC_005262.1 + 49895 0.71 0.456017
Target:  5'- gCGCGGCCGaucgggccggacGGUGCagggGCGUCcGGCGCGGc -3'
miRNA:   3'- -GCGUCGGC------------CUAUGa---CGUAG-CUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 49883 0.67 0.676978
Target:  5'- aGcCGGCCGGAaacggucgAUUGuCGUCGGCGaCGAc -3'
miRNA:   3'- gC-GUCGGCCUa-------UGAC-GUAGCUGC-GCU- -5'
24006 5' -55.8 NC_005262.1 + 49851 0.7 0.471765
Target:  5'- aGCGGCCGGAgccucgggcgcggGCgccgccgGCGUCGGUGCGGc -3'
miRNA:   3'- gCGUCGGCCUa------------UGa------CGUAGCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 48632 0.68 0.60129
Target:  5'- aGCGGcCCGGcuccUGC-GCAUCGAgaCGCGAu -3'
miRNA:   3'- gCGUC-GGCCu---AUGaCGUAGCU--GCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.