Results 21 - 40 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24006 | 5' | -55.8 | NC_005262.1 | + | 48116 | 0.74 | 0.279658 |
Target: 5'- gCGCGGCCGGcUGCUGCGUggucuggguguUGGuCGCGGg -3' miRNA: 3'- -GCGUCGGCCuAUGACGUA-----------GCU-GCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 48077 | 0.67 | 0.655409 |
Target: 5'- gGguGCCGGGgaaGCUcgGCAgggagaGGCGCGAg -3' miRNA: 3'- gCguCGGCCUa--UGA--CGUag----CUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 48039 | 0.67 | 0.676978 |
Target: 5'- aGCAGCCGGccGCgcccgcaagcGCGUCGGuCGCa- -3' miRNA: 3'- gCGUCGGCCuaUGa---------CGUAGCU-GCGcu -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 47825 | 0.67 | 0.700509 |
Target: 5'- cCGCGGCCGGcgGCgcaccagauacagGCGgcgagccgccgccCGGCGCGGu -3' miRNA: 3'- -GCGUCGGCCuaUGa------------CGUa------------GCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 47747 | 0.66 | 0.708995 |
Target: 5'- gCGCcGCCGGccgcgGCgaacccgGCAUCG-CGCGGg -3' miRNA: 3'- -GCGuCGGCCua---UGa------CGUAGCuGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 46778 | 0.67 | 0.687705 |
Target: 5'- uGCGcGCgCGGcgcugACUGCAUCGGCGgGc -3' miRNA: 3'- gCGU-CG-GCCua---UGACGUAGCUGCgCu -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 46756 | 0.66 | 0.719536 |
Target: 5'- cCGCcacGCCGGucGUACagGCggCGACGCGc -3' miRNA: 3'- -GCGu--CGGCC--UAUGa-CGuaGCUGCGCu -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 46581 | 0.72 | 0.37059 |
Target: 5'- uCGCGGUCGGAgUgcucaugucgacggGCUGCGUCGugGCc- -3' miRNA: 3'- -GCGUCGGCCU-A--------------UGACGUAGCugCGcu -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 44805 | 0.69 | 0.537259 |
Target: 5'- uCGCGGCCGa--GCUGCAuuuccUCGcGCGCGGc -3' miRNA: 3'- -GCGUCGGCcuaUGACGU-----AGC-UGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 43929 | 0.68 | 0.620757 |
Target: 5'- cCGCGGCCGacuacaacacGCUGCGcgaCGACGUGAg -3' miRNA: 3'- -GCGUCGGCcua-------UGACGUa--GCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 43913 | 0.72 | 0.37317 |
Target: 5'- gCGCGGCCGGcccgcgGCcGUGUCGcCGCGAu -3' miRNA: 3'- -GCGUCGGCCua----UGaCGUAGCuGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 43834 | 0.69 | 0.526794 |
Target: 5'- cCGCgGGCCGGccgcgcgcggcgGUGCgccgGCAggaccUCGGCGCGAu -3' miRNA: 3'- -GCG-UCGGCC------------UAUGa---CGU-----AGCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 39301 | 0.76 | 0.211213 |
Target: 5'- gGCAGCuCGGA--CUGacCAUCGACGCGAa -3' miRNA: 3'- gCGUCG-GCCUauGAC--GUAGCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 35814 | 0.7 | 0.49487 |
Target: 5'- aCGCgaacagcaucaugGGCCGGA-GCgGCGUCGGCGCc- -3' miRNA: 3'- -GCG-------------UCGGCCUaUGaCGUAGCUGCGcu -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 34501 | 0.66 | 0.750611 |
Target: 5'- gGCGGCgCGcGAcuuCUGCGagaCGACGCGGc -3' miRNA: 3'- gCGUCG-GC-CUau-GACGUa--GCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 34148 | 0.7 | 0.489803 |
Target: 5'- uGcCAGuCCGGGUucuggucgucgagcaACUGCcgAUCGACGCGGc -3' miRNA: 3'- gC-GUC-GGCCUA---------------UGACG--UAGCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 33317 | 0.71 | 0.44632 |
Target: 5'- cCGUcgAGUCGGAcgcaACUGCGUCGcuGCGCGGc -3' miRNA: 3'- -GCG--UCGGCCUa---UGACGUAGC--UGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 31922 | 0.66 | 0.740355 |
Target: 5'- aCGC-GCCGGAcgucgccaccUGCUGUAcggcggUGugGCGAc -3' miRNA: 3'- -GCGuCGGCCU----------AUGACGUa-----GCugCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 30886 | 0.67 | 0.687705 |
Target: 5'- aGCGGCCGGAUGgUGaCGcCGcuCGCGc -3' miRNA: 3'- gCGUCGGCCUAUgAC-GUaGCu-GCGCu -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 30045 | 0.68 | 0.590507 |
Target: 5'- aGCAGCgGGcaagaccgacgAUGCUGCcggCGACGaCGAc -3' miRNA: 3'- gCGUCGgCC-----------UAUGACGua-GCUGC-GCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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