Results 1 - 20 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24006 | 5' | -55.8 | NC_005262.1 | + | 6456 | 0.68 | 0.590507 |
Target: 5'- gGCu-CCGGcgagACgccgGCAUCGACGCGGg -3' miRNA: 3'- gCGucGGCCua--UGa---CGUAGCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 8270 | 0.7 | 0.516406 |
Target: 5'- aGCGGCCgaGGAaGCUGCccgcGUCGcuCGCGAg -3' miRNA: 3'- gCGUCGG--CCUaUGACG----UAGCu-GCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 19299 | 0.69 | 0.526794 |
Target: 5'- uCGCAGCCGacGUGCU-CggCGAUGCGAg -3' miRNA: 3'- -GCGUCGGCc-UAUGAcGuaGCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 7527 | 0.69 | 0.526794 |
Target: 5'- gGCAGguUCGGcgGC-GCGUCGGCGCGc -3' miRNA: 3'- gCGUC--GGCCuaUGaCGUAGCUGCGCu -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 43834 | 0.69 | 0.526794 |
Target: 5'- cCGCgGGCCGGccgcgcgcggcgGUGCgccgGCAggaccUCGGCGCGAu -3' miRNA: 3'- -GCG-UCGGCC------------UAUGa---CGU-----AGCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 1134 | 0.69 | 0.541465 |
Target: 5'- uGCGGCCGcugcgggcuucGAUGCUGCcgCGcgggcuugccauccuGCGCGGa -3' miRNA: 3'- gCGUCGGC-----------CUAUGACGuaGC---------------UGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 17974 | 0.68 | 0.579758 |
Target: 5'- aCGCAgcGCCGGAagUGC-GCAcguucuUCGACGUGGc -3' miRNA: 3'- -GCGU--CGGCCU--AUGaCGU------AGCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 30045 | 0.68 | 0.590507 |
Target: 5'- aGCAGCgGGcaagaccgacgAUGCUGCcggCGACGaCGAc -3' miRNA: 3'- gCGUCGgCC-----------UAUGACGua-GCUGC-GCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 6144 | 0.68 | 0.590507 |
Target: 5'- gCGCGGCCGGGauuuUGCUG-AUCGAgaucgucaCGCGc -3' miRNA: 3'- -GCGUCGGCCU----AUGACgUAGCU--------GCGCu -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 35814 | 0.7 | 0.49487 |
Target: 5'- aCGCgaacagcaucaugGGCCGGA-GCgGCGUCGGCGCc- -3' miRNA: 3'- -GCG-------------UCGGCCUaUGaCGUAGCUGCGcu -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 11867 | 0.7 | 0.465827 |
Target: 5'- cCGCuGUCGGcgACgUGUAUCG-CGCGAa -3' miRNA: 3'- -GCGuCGGCCuaUG-ACGUAGCuGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 33317 | 0.71 | 0.44632 |
Target: 5'- cCGUcgAGUCGGAcgcaACUGCGUCGcuGCGCGGc -3' miRNA: 3'- -GCG--UCGGCCUa---UGACGUAGC--UGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 39301 | 0.76 | 0.211213 |
Target: 5'- gGCAGCuCGGA--CUGacCAUCGACGCGAa -3' miRNA: 3'- gCGUCG-GCCUauGAC--GUAGCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 16681 | 0.74 | 0.279658 |
Target: 5'- cCGCAGCCGGGcgaggAgUGCAUCGucACGCa- -3' miRNA: 3'- -GCGUCGGCCUa----UgACGUAGC--UGCGcu -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 63288 | 0.74 | 0.301157 |
Target: 5'- uGaCGGCCGGcUGCUggcucgGCGUCGACGUGGa -3' miRNA: 3'- gC-GUCGGCCuAUGA------CGUAGCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 27830 | 0.74 | 0.316185 |
Target: 5'- gCGCGGCCGGucugacuucaagGUGCUGCcgCGuCGCa- -3' miRNA: 3'- -GCGUCGGCC------------UAUGACGuaGCuGCGcu -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 15143 | 0.72 | 0.37317 |
Target: 5'- uCGCGGCCGGcguCga-GUCGGCGCGGa -3' miRNA: 3'- -GCGUCGGCCuauGacgUAGCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 58876 | 0.72 | 0.39964 |
Target: 5'- gCGCAGCCcgcgcguuGGcUGCUGCcgCGcuGCGCGAu -3' miRNA: 3'- -GCGUCGG--------CCuAUGACGuaGC--UGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 10567 | 0.71 | 0.417939 |
Target: 5'- gCGCAGCCGcagcGUACcGCGgagcagcgCGGCGCGAg -3' miRNA: 3'- -GCGUCGGCc---UAUGaCGUa-------GCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 15278 | 0.71 | 0.417939 |
Target: 5'- aCGCGGCaUGGAUGCUGCcagucGUCGAuucgcCGCGc -3' miRNA: 3'- -GCGUCG-GCCUAUGACG-----UAGCU-----GCGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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