Results 41 - 60 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24006 | 5' | -55.8 | NC_005262.1 | + | 46778 | 0.67 | 0.687705 |
Target: 5'- uGCGcGCgCGGcgcugACUGCAUCGGCGgGc -3' miRNA: 3'- gCGU-CG-GCCua---UGACGUAGCUGCgCu -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 26498 | 0.67 | 0.666209 |
Target: 5'- aGCAGCgGGA-AC-GCGUCG-CGCGu -3' miRNA: 3'- gCGUCGgCCUaUGaCGUAGCuGCGCu -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 192 | 0.67 | 0.655409 |
Target: 5'- uCGcCGGCCGGugacAUGCgcagaaGCGUgCGGCGCGGc -3' miRNA: 3'- -GC-GUCGGCC----UAUGa-----CGUA-GCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 48077 | 0.67 | 0.655409 |
Target: 5'- gGguGCCGGGgaaGCUcgGCAgggagaGGCGCGAg -3' miRNA: 3'- gCguCGGCCUa--UGA--CGUag----CUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 2329 | 0.67 | 0.648918 |
Target: 5'- aCGCGGCCcGAgACUuugcccuuacagggaGCGgcuUCGACGCGAu -3' miRNA: 3'- -GCGUCGGcCUaUGA---------------CGU---AGCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 50195 | 0.68 | 0.633756 |
Target: 5'- gCGCucGGCCGGcuuCUGUucgcgCGGCGCGGg -3' miRNA: 3'- -GCG--UCGGCCuauGACGua---GCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 1879 | 0.68 | 0.622923 |
Target: 5'- cCGCauugacuggauGGgCGGAUAugucugucugacCUGCAUCGAuCGCGAg -3' miRNA: 3'- -GCG-----------UCgGCCUAU------------GACGUAGCU-GCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 13942 | 0.68 | 0.622923 |
Target: 5'- aCGaCGGCCGG-UGCUGCGccaUCGAguCGcCGAa -3' miRNA: 3'- -GC-GUCGGCCuAUGACGU---AGCU--GC-GCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 16951 | 0.68 | 0.612098 |
Target: 5'- gCGCGGCCGGGcgcCUGCAUCaguuGAUGauCGAa -3' miRNA: 3'- -GCGUCGGCCUau-GACGUAG----CUGC--GCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 28932 | 0.67 | 0.687705 |
Target: 5'- cCGCcgaccuGCUGGAUcauCUGgAUCGAgCGCGAc -3' miRNA: 3'- -GCGu-----CGGCCUAu--GACgUAGCU-GCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 22304 | 0.67 | 0.687705 |
Target: 5'- gCGCGGCCGuGA-GCU-UGUCGAgCGCGAg -3' miRNA: 3'- -GCGUCGGC-CUaUGAcGUAGCU-GCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 50961 | 0.67 | 0.698381 |
Target: 5'- aGCGcGCCGuGcgAUUGCGUCGGCaccuGCGGc -3' miRNA: 3'- gCGU-CGGC-CuaUGACGUAGCUG----CGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 18978 | 0.66 | 0.740355 |
Target: 5'- cCGUGGUCGGG-ACUGgAUgCGGCGCa- -3' miRNA: 3'- -GCGUCGGCCUaUGACgUA-GCUGCGcu -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 11496 | 0.66 | 0.729993 |
Target: 5'- gGCGGcCCGGcgcgGCgcgGCuUCGGCGUGGa -3' miRNA: 3'- gCGUC-GGCCua--UGa--CGuAGCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 29521 | 0.66 | 0.729993 |
Target: 5'- cCGCAGCCuugcGGGccuucgccUGCUGCuccUCGAgcguCGCGAu -3' miRNA: 3'- -GCGUCGG----CCU--------AUGACGu--AGCU----GCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 50086 | 0.66 | 0.729993 |
Target: 5'- gGC-GCCGGcgcgGCUuCAUCGGCGgGAg -3' miRNA: 3'- gCGuCGGCCua--UGAcGUAGCUGCgCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 59045 | 0.66 | 0.729993 |
Target: 5'- gGCGGCCGG---CUGguUCGACuGCu- -3' miRNA: 3'- gCGUCGGCCuauGACguAGCUG-CGcu -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 50923 | 0.66 | 0.719536 |
Target: 5'- uGCGcGCgGGAUGCcaGCGUgcccgucucCGGCGCGAa -3' miRNA: 3'- gCGU-CGgCCUAUGa-CGUA---------GCUGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 11126 | 0.66 | 0.708995 |
Target: 5'- uGCGGCCuGuUGCUGCGcgCGgucuuGCGCGAc -3' miRNA: 3'- gCGUCGGcCuAUGACGUa-GC-----UGCGCU- -5' |
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24006 | 5' | -55.8 | NC_005262.1 | + | 47825 | 0.67 | 0.700509 |
Target: 5'- cCGCGGCCGGcgGCgcaccagauacagGCGgcgagccgccgccCGGCGCGGu -3' miRNA: 3'- -GCGUCGGCCuaUGa------------CGUa------------GCUGCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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