miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24006 5' -55.8 NC_005262.1 + 12354 0.66 0.750611
Target:  5'- uCGcCGGCCGcgaucgacaGGUGCccgacCAUCGACGCGAc -3'
miRNA:   3'- -GC-GUCGGC---------CUAUGac---GUAGCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 50195 0.68 0.633756
Target:  5'- gCGCucGGCCGGcuuCUGUucgcgCGGCGCGGg -3'
miRNA:   3'- -GCG--UCGGCCuauGACGua---GCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 13942 0.68 0.622923
Target:  5'- aCGaCGGCCGG-UGCUGCGccaUCGAguCGcCGAa -3'
miRNA:   3'- -GC-GUCGGCCuAUGACGU---AGCU--GC-GCU- -5'
24006 5' -55.8 NC_005262.1 + 60235 0.77 0.183699
Target:  5'- gGCGGCCGGGUACUucgcccaugccuucGCcgCGACGCu- -3'
miRNA:   3'- gCGUCGGCCUAUGA--------------CGuaGCUGCGcu -5'
24006 5' -55.8 NC_005262.1 + 50086 0.66 0.729993
Target:  5'- gGC-GCCGGcgcgGCUuCAUCGGCGgGAg -3'
miRNA:   3'- gCGuCGGCCua--UGAcGUAGCUGCgCU- -5'
24006 5' -55.8 NC_005262.1 + 59045 0.66 0.729993
Target:  5'- gGCGGCCGG---CUGguUCGACuGCu- -3'
miRNA:   3'- gCGUCGGCCuauGACguAGCUG-CGcu -5'
24006 5' -55.8 NC_005262.1 + 11126 0.66 0.708995
Target:  5'- uGCGGCCuGuUGCUGCGcgCGgucuuGCGCGAc -3'
miRNA:   3'- gCGUCGGcCuAUGACGUa-GC-----UGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 47825 0.67 0.700509
Target:  5'- cCGCGGCCGGcgGCgcaccagauacagGCGgcgagccgccgccCGGCGCGGu -3'
miRNA:   3'- -GCGUCGGCCuaUGa------------CGUa------------GCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 28932 0.67 0.687705
Target:  5'- cCGCcgaccuGCUGGAUcauCUGgAUCGAgCGCGAc -3'
miRNA:   3'- -GCGu-----CGGCCUAu--GACgUAGCU-GCGCU- -5'
24006 5' -55.8 NC_005262.1 + 2329 0.67 0.648918
Target:  5'- aCGCGGCCcGAgACUuugcccuuacagggaGCGgcuUCGACGCGAu -3'
miRNA:   3'- -GCGUCGGcCUaUGA---------------CGU---AGCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 26498 0.67 0.666209
Target:  5'- aGCAGCgGGA-AC-GCGUCG-CGCGu -3'
miRNA:   3'- gCGUCGgCCUaUGaCGUAGCuGCGCu -5'
24006 5' -55.8 NC_005262.1 + 22304 0.67 0.687705
Target:  5'- gCGCGGCCGuGA-GCU-UGUCGAgCGCGAg -3'
miRNA:   3'- -GCGUCGGC-CUaUGAcGUAGCU-GCGCU- -5'
24006 5' -55.8 NC_005262.1 + 18978 0.66 0.740355
Target:  5'- cCGUGGUCGGG-ACUGgAUgCGGCGCa- -3'
miRNA:   3'- -GCGUCGGCCUaUGACgUA-GCUGCGcu -5'
24006 5' -55.8 NC_005262.1 + 192 0.67 0.655409
Target:  5'- uCGcCGGCCGGugacAUGCgcagaaGCGUgCGGCGCGGc -3'
miRNA:   3'- -GC-GUCGGCC----UAUGa-----CGUA-GCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 11496 0.66 0.729993
Target:  5'- gGCGGcCCGGcgcgGCgcgGCuUCGGCGUGGa -3'
miRNA:   3'- gCGUC-GGCCua--UGa--CGuAGCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 50961 0.67 0.698381
Target:  5'- aGCGcGCCGuGcgAUUGCGUCGGCaccuGCGGc -3'
miRNA:   3'- gCGU-CGGC-CuaUGACGUAGCUG----CGCU- -5'
24006 5' -55.8 NC_005262.1 + 48077 0.67 0.655409
Target:  5'- gGguGCCGGGgaaGCUcgGCAgggagaGGCGCGAg -3'
miRNA:   3'- gCguCGGCCUa--UGA--CGUag----CUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 1879 0.68 0.622923
Target:  5'- cCGCauugacuggauGGgCGGAUAugucugucugacCUGCAUCGAuCGCGAg -3'
miRNA:   3'- -GCG-----------UCgGCCUAU------------GACGUAGCU-GCGCU- -5'
24006 5' -55.8 NC_005262.1 + 29521 0.66 0.729993
Target:  5'- cCGCAGCCuugcGGGccuucgccUGCUGCuccUCGAgcguCGCGAu -3'
miRNA:   3'- -GCGUCGG----CCU--------AUGACGu--AGCU----GCGCU- -5'
24006 5' -55.8 NC_005262.1 + 50923 0.66 0.719536
Target:  5'- uGCGcGCgGGAUGCcaGCGUgcccgucucCGGCGCGAa -3'
miRNA:   3'- gCGU-CGgCCUAUGa-CGUA---------GCUGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.