miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24006 5' -55.8 NC_005262.1 + 48632 0.68 0.60129
Target:  5'- aGCGGcCCGGcuccUGC-GCAUCGAgaCGCGAu -3'
miRNA:   3'- gCGUC-GGCCu---AUGaCGUAGCU--GCGCU- -5'
24006 5' -55.8 NC_005262.1 + 16951 0.68 0.612098
Target:  5'- gCGCGGCCGGGcgcCUGCAUCaguuGAUGauCGAa -3'
miRNA:   3'- -GCGUCGGCCUau-GACGUAG----CUGC--GCU- -5'
24006 5' -55.8 NC_005262.1 + 28932 0.67 0.687705
Target:  5'- cCGCcgaccuGCUGGAUcauCUGgAUCGAgCGCGAc -3'
miRNA:   3'- -GCGu-----CGGCCUAu--GACgUAGCU-GCGCU- -5'
24006 5' -55.8 NC_005262.1 + 50086 0.66 0.729993
Target:  5'- gGC-GCCGGcgcgGCUuCAUCGGCGgGAg -3'
miRNA:   3'- gCGuCGGCCua--UGAcGUAGCUGCgCU- -5'
24006 5' -55.8 NC_005262.1 + 58961 0.71 0.417012
Target:  5'- aGCAGCCaacgcgcGGA-GCUGCGcCGGCGUGAc -3'
miRNA:   3'- gCGUCGG-------CCUaUGACGUaGCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 16553 0.69 0.547794
Target:  5'- gGCAGCgGGAUACgUGCGauuUCGACuCGu -3'
miRNA:   3'- gCGUCGgCCUAUG-ACGU---AGCUGcGCu -5'
24006 5' -55.8 NC_005262.1 + 1879 0.68 0.622923
Target:  5'- cCGCauugacuggauGGgCGGAUAugucugucugacCUGCAUCGAuCGCGAg -3'
miRNA:   3'- -GCG-----------UCgGCCUAU------------GACGUAGCU-GCGCU- -5'
24006 5' -55.8 NC_005262.1 + 29521 0.66 0.729993
Target:  5'- cCGCAGCCuugcGGGccuucgccUGCUGCuccUCGAgcguCGCGAu -3'
miRNA:   3'- -GCGUCGG----CCU--------AUGACGu--AGCU----GCGCU- -5'
24006 5' -55.8 NC_005262.1 + 56277 0.69 0.552027
Target:  5'- gGUAGUCGGAUGCcGCAUgguagucggcgaucaCGGCGuCGAu -3'
miRNA:   3'- gCGUCGGCCUAUGaCGUA---------------GCUGC-GCU- -5'
24006 5' -55.8 NC_005262.1 + 11496 0.66 0.729993
Target:  5'- gGCGGcCCGGcgcgGCgcgGCuUCGGCGUGGa -3'
miRNA:   3'- gCGUC-GGCCua--UGa--CGuAGCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 13942 0.68 0.622923
Target:  5'- aCGaCGGCCGG-UGCUGCGccaUCGAguCGcCGAa -3'
miRNA:   3'- -GC-GUCGGCCuAUGACGU---AGCU--GC-GCU- -5'
24006 5' -55.8 NC_005262.1 + 21863 0.68 0.590507
Target:  5'- aGCAuGCCGaGAUGCUugGCGacgUUGACGCGu -3'
miRNA:   3'- gCGU-CGGC-CUAUGA--CGU---AGCUGCGCu -5'
24006 5' -55.8 NC_005262.1 + 48077 0.67 0.655409
Target:  5'- gGguGCCGGGgaaGCUcgGCAgggagaGGCGCGAg -3'
miRNA:   3'- gCguCGGCCUa--UGA--CGUag----CUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 46778 0.67 0.687705
Target:  5'- uGCGcGCgCGGcgcugACUGCAUCGGCGgGc -3'
miRNA:   3'- gCGU-CG-GCCua---UGACGUAGCUGCgCu -5'
24006 5' -55.8 NC_005262.1 + 47825 0.67 0.700509
Target:  5'- cCGCGGCCGGcgGCgcaccagauacagGCGgcgagccgccgccCGGCGCGGu -3'
miRNA:   3'- -GCGUCGGCCuaUGa------------CGUa------------GCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 59045 0.66 0.729993
Target:  5'- gGCGGCCGG---CUGguUCGACuGCu- -3'
miRNA:   3'- gCGUCGGCCuauGACguAGCUG-CGcu -5'
24006 5' -55.8 NC_005262.1 + 50732 0.74 0.293852
Target:  5'- uGgAGCCGGuUGCUGC-UCGGCgGCGAc -3'
miRNA:   3'- gCgUCGGCCuAUGACGuAGCUG-CGCU- -5'
24006 5' -55.8 NC_005262.1 + 43913 0.72 0.37317
Target:  5'- gCGCGGCCGGcccgcgGCcGUGUCGcCGCGAu -3'
miRNA:   3'- -GCGUCGGCCua----UGaCGUAGCuGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 34148 0.7 0.489803
Target:  5'- uGcCAGuCCGGGUucuggucgucgagcaACUGCcgAUCGACGCGGc -3'
miRNA:   3'- gC-GUC-GGCCUA---------------UGACG--UAGCUGCGCU- -5'
24006 5' -55.8 NC_005262.1 + 55498 0.69 0.537259
Target:  5'- -cCAGCCGGcgcucgaGCUGC-UCGAUGCGGc -3'
miRNA:   3'- gcGUCGGCCua-----UGACGuAGCUGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.