miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24007 5' -51.6 NC_005262.1 + 60018 0.66 0.911897
Target:  5'- -aGCGCCUcGUCGUUGAUCUg-GAUGc -3'
miRNA:   3'- agUGUGGAcUAGCGACUGGAagCUAC- -5'
24007 5' -51.6 NC_005262.1 + 12267 0.66 0.911897
Target:  5'- -gGCACCUgucGAUCGC-GGCCggCGAg- -3'
miRNA:   3'- agUGUGGA---CUAGCGaCUGGaaGCUac -5'
24007 5' -51.6 NC_005262.1 + 19438 0.67 0.883625
Target:  5'- -gGCAUCUGAagcgcugggCGUUGGCC-UCGAUGc -3'
miRNA:   3'- agUGUGGACUa--------GCGACUGGaAGCUAC- -5'
24007 5' -51.6 NC_005262.1 + 31588 0.67 0.883625
Target:  5'- -gACGCCggcGAUCGCaucACCUUCGAc- -3'
miRNA:   3'- agUGUGGa--CUAGCGac-UGGAAGCUac -5'
24007 5' -51.6 NC_005262.1 + 48036 0.67 0.875879
Target:  5'- uUCGCGCCU--UCGgUGAacaaaUCUUCGAUGu -3'
miRNA:   3'- -AGUGUGGAcuAGCgACU-----GGAAGCUAC- -5'
24007 5' -51.6 NC_005262.1 + 49335 0.67 0.867872
Target:  5'- gUugAUCUGGUCGCgGACCUcgcgCGcgGa -3'
miRNA:   3'- aGugUGGACUAGCGaCUGGAa---GCuaC- -5'
24007 5' -51.6 NC_005262.1 + 56774 0.68 0.851106
Target:  5'- gCGCACgCUGucGUCGCcguugagGGCCUguUCGAUGa -3'
miRNA:   3'- aGUGUG-GAC--UAGCGa------CUGGA--AGCUAC- -5'
24007 5' -51.6 NC_005262.1 + 39300 0.68 0.842363
Target:  5'- --cCGCCUGcUUGCUGGCCggaUCGAa- -3'
miRNA:   3'- aguGUGGACuAGCGACUGGa--AGCUac -5'
24007 5' -51.6 NC_005262.1 + 51144 0.68 0.824201
Target:  5'- -aGCACCUGAUgGU--GCCcgUCGAUGa -3'
miRNA:   3'- agUGUGGACUAgCGacUGGa-AGCUAC- -5'
24007 5' -51.6 NC_005262.1 + 59633 0.68 0.823271
Target:  5'- cUCGCGCUccucguggcccauUGcgCGCuUGACCUUCGGg- -3'
miRNA:   3'- -AGUGUGG-------------ACuaGCG-ACUGGAAGCUac -5'
24007 5' -51.6 NC_005262.1 + 54921 0.69 0.781428
Target:  5'- cUCGCACCUGAcgcugccgggcgugUCGCUGcgcuucaACCUgcgCGAa- -3'
miRNA:   3'- -AGUGUGGACU--------------AGCGAC-------UGGAa--GCUac -5'
24007 5' -51.6 NC_005262.1 + 18119 0.7 0.744085
Target:  5'- cUCGCGCgUGAUCG-UGACCauUUCGAc- -3'
miRNA:   3'- -AGUGUGgACUAGCgACUGG--AAGCUac -5'
24007 5' -51.6 NC_005262.1 + 23773 1.09 0.003009
Target:  5'- uUCACACCUGAUCGCUGACCUUCGAUGc -3'
miRNA:   3'- -AGUGUGGACUAGCGACUGGAAGCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.