miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24008 3' -60.1 NC_005262.1 + 4663 0.66 0.521154
Target:  5'- aCGCCCGAgcagCGccgccgcUGGCGCgagaugcgccGCGCGcGCAc -3'
miRNA:   3'- -GCGGGCUa---GCu------ACCGCGa---------CGUGC-CGU- -5'
24008 3' -60.1 NC_005262.1 + 11670 0.66 0.521154
Target:  5'- uCGCUCGAgCGcUGGcCGCcGC-CGGCAu -3'
miRNA:   3'- -GCGGGCUaGCuACC-GCGaCGuGCCGU- -5'
24008 3' -60.1 NC_005262.1 + 41181 0.66 0.521154
Target:  5'- cCGCCgCGAUCGcguGCGC-GCcCGGCGa -3'
miRNA:   3'- -GCGG-GCUAGCuacCGCGaCGuGCCGU- -5'
24008 3' -60.1 NC_005262.1 + 44235 0.66 0.51106
Target:  5'- uGCCCGAUCGc--GCGC-GCGucCGGCc -3'
miRNA:   3'- gCGGGCUAGCuacCGCGaCGU--GCCGu -5'
24008 3' -60.1 NC_005262.1 + 2740 0.66 0.51106
Target:  5'- gCGCCuCGAgguccCGGauGCGCUucaGCACGGCGg -3'
miRNA:   3'- -GCGG-GCUa----GCUacCGCGA---CGUGCCGU- -5'
24008 3' -60.1 NC_005262.1 + 31915 0.66 0.51106
Target:  5'- cCGCUCGAcgCGccGGacgucgccaccUGCUGUACGGCGg -3'
miRNA:   3'- -GCGGGCUa-GCuaCC-----------GCGACGUGCCGU- -5'
24008 3' -60.1 NC_005262.1 + 27127 0.66 0.501048
Target:  5'- gCGUgaGGUCGAUGGCGggGCG-GGCu -3'
miRNA:   3'- -GCGggCUAGCUACCGCgaCGUgCCGu -5'
24008 3' -60.1 NC_005262.1 + 48342 0.66 0.501048
Target:  5'- aGCUCGGcacgacCGAcccGGCGCUGCugGCGGCc -3'
miRNA:   3'- gCGGGCUa-----GCUa--CCGCGACG--UGCCGu -5'
24008 3' -60.1 NC_005262.1 + 43891 0.66 0.500052
Target:  5'- uGgCCGAcaugaagUCGAaGGCGUcaGCGCGGCGc -3'
miRNA:   3'- gCgGGCU-------AGCUaCCGCGa-CGUGCCGU- -5'
24008 3' -60.1 NC_005262.1 + 9448 0.66 0.491124
Target:  5'- aGCCCGcAUUGugcGGCaccaucCUGCACGGUAu -3'
miRNA:   3'- gCGGGC-UAGCua-CCGc-----GACGUGCCGU- -5'
24008 3' -60.1 NC_005262.1 + 63279 0.66 0.491124
Target:  5'- cCGCCUGcUUGAcGGCcgGCUGCuggcuCGGCGu -3'
miRNA:   3'- -GCGGGCuAGCUaCCG--CGACGu----GCCGU- -5'
24008 3' -60.1 NC_005262.1 + 21625 0.66 0.491124
Target:  5'- uGCCCGGagugCGAcGGCGacgGCgACGGCc -3'
miRNA:   3'- gCGGGCUa---GCUaCCGCga-CG-UGCCGu -5'
24008 3' -60.1 NC_005262.1 + 29773 0.66 0.491124
Target:  5'- cCGCCCGG-CGua-GUGCcggacgGCGCGGCAc -3'
miRNA:   3'- -GCGGGCUaGCuacCGCGa-----CGUGCCGU- -5'
24008 3' -60.1 NC_005262.1 + 40592 0.66 0.481291
Target:  5'- uCGCgCUGA-CGGUGGCGCagaUGCcgcagcauaaucACGGCGu -3'
miRNA:   3'- -GCG-GGCUaGCUACCGCG---ACG------------UGCCGU- -5'
24008 3' -60.1 NC_005262.1 + 11493 0.66 0.481291
Target:  5'- gGCCCGG-CGc-GGCGCgGCuuCGGCGu -3'
miRNA:   3'- gCGGGCUaGCuaCCGCGaCGu-GCCGU- -5'
24008 3' -60.1 NC_005262.1 + 35213 0.66 0.480313
Target:  5'- aCGUCCGcaaggaugcggagGUCGgcGGCGCgaucgGCAgCGGCu -3'
miRNA:   3'- -GCGGGC-------------UAGCuaCCGCGa----CGU-GCCGu -5'
24008 3' -60.1 NC_005262.1 + 5975 0.66 0.47836
Target:  5'- cCGCCCGAcaucgacgUCGAUcgcuucauccgcacGGUGCUGaccaGCGuGCAg -3'
miRNA:   3'- -GCGGGCU--------AGCUA--------------CCGCGACg---UGC-CGU- -5'
24008 3' -60.1 NC_005262.1 + 23344 0.66 0.471555
Target:  5'- gCGCUCGAccaCGGccGGCGUgaagcGCGCGGCGg -3'
miRNA:   3'- -GCGGGCUa--GCUa-CCGCGa----CGUGCCGU- -5'
24008 3' -60.1 NC_005262.1 + 54466 0.66 0.471555
Target:  5'- gCGCaacGUCGA-GGCGCUGCucGCGGUg -3'
miRNA:   3'- -GCGggcUAGCUaCCGCGACG--UGCCGu -5'
24008 3' -60.1 NC_005262.1 + 20995 0.66 0.471555
Target:  5'- aCGCCgCGAgcuacggggaGAUGGUGCUaucgucGUGCGGCGg -3'
miRNA:   3'- -GCGG-GCUag--------CUACCGCGA------CGUGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.