miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24008 5' -53.4 NC_005262.1 + 43832 0.66 0.874213
Target:  5'- --gGCCGCGggC-CGGCCGcgcGCGGc -3'
miRNA:   3'- gaaCGGCGCuaGcGUUGGCauaCGCC- -5'
24008 5' -53.4 NC_005262.1 + 5190 0.66 0.874213
Target:  5'- --gGgCGCGggCGCGGCCGgc-GCGa -3'
miRNA:   3'- gaaCgGCGCuaGCGUUGGCauaCGCc -5'
24008 5' -53.4 NC_005262.1 + 5099 0.66 0.874213
Target:  5'- -cUGCCGCuGGagGCAGCCGaAUGaucuGGa -3'
miRNA:   3'- gaACGGCG-CUagCGUUGGCaUACg---CC- -5'
24008 5' -53.4 NC_005262.1 + 13059 0.66 0.874213
Target:  5'- --gGUCGCGGUCGUcgacgccgAGCCgGUcgGCGa -3'
miRNA:   3'- gaaCGGCGCUAGCG--------UUGG-CAuaCGCc -5'
24008 5' -53.4 NC_005262.1 + 48195 0.66 0.873435
Target:  5'- uCUUGCgCGCGGcgcgucacaucaUCGCGcgucggcGCCGg--GCGGc -3'
miRNA:   3'- -GAACG-GCGCU------------AGCGU-------UGGCauaCGCC- -5'
24008 5' -53.4 NC_005262.1 + 43953 0.66 0.866328
Target:  5'- -aUGCgCGCGAUCGC-GCCGagguccUGcCGGc -3'
miRNA:   3'- gaACG-GCGCUAGCGuUGGCau----AC-GCC- -5'
24008 5' -53.4 NC_005262.1 + 52887 0.66 0.866328
Target:  5'- -cUGCCacuGCGAauccuugaaGCGGCCGUA-GCGGu -3'
miRNA:   3'- gaACGG---CGCUag-------CGUUGGCAUaCGCC- -5'
24008 5' -53.4 NC_005262.1 + 11180 0.66 0.866328
Target:  5'- --cGCCGaCGA-CGCcGCCGUgaucGUGCGc -3'
miRNA:   3'- gaaCGGC-GCUaGCGuUGGCA----UACGCc -5'
24008 5' -53.4 NC_005262.1 + 37206 0.66 0.866328
Target:  5'- --gGCgGCuGAUCGCGaaagguGCCGauauUGCGGa -3'
miRNA:   3'- gaaCGgCG-CUAGCGU------UGGCau--ACGCC- -5'
24008 5' -53.4 NC_005262.1 + 25533 0.66 0.866328
Target:  5'- ---uCCGCG-UCGCGAcguCCGUGcGCGGc -3'
miRNA:   3'- gaacGGCGCuAGCGUU---GGCAUaCGCC- -5'
24008 5' -53.4 NC_005262.1 + 20994 0.66 0.859025
Target:  5'- --cGCCGCGAgcuacggggagauggUGCuAUCGUcGUGCGGc -3'
miRNA:   3'- gaaCGGCGCUa--------------GCGuUGGCA-UACGCC- -5'
24008 5' -53.4 NC_005262.1 + 60169 0.66 0.858201
Target:  5'- --cGCCGUGAagGCGcucgGCCaGUggGCGGc -3'
miRNA:   3'- gaaCGGCGCUagCGU----UGG-CAuaCGCC- -5'
24008 5' -53.4 NC_005262.1 + 31590 0.66 0.850687
Target:  5'- --cGCCgGCGAUCGCAucaccuucgaccucuCCGUGcaccUGCGcGg -3'
miRNA:   3'- gaaCGG-CGCUAGCGUu--------------GGCAU----ACGC-C- -5'
24008 5' -53.4 NC_005262.1 + 23422 0.66 0.849841
Target:  5'- --gGCCGUGGUCGagcgcguGCuCGUGcGCGGc -3'
miRNA:   3'- gaaCGGCGCUAGCgu-----UG-GCAUaCGCC- -5'
24008 5' -53.4 NC_005262.1 + 54565 0.66 0.849841
Target:  5'- --cGCCGCGuUCGCGAgCGag-GCGc -3'
miRNA:   3'- gaaCGGCGCuAGCGUUgGCauaCGCc -5'
24008 5' -53.4 NC_005262.1 + 36007 0.66 0.849841
Target:  5'- -gUGCCGCGcgagugccGUCGCAucAUCGUGccgcGUGGa -3'
miRNA:   3'- gaACGGCGC--------UAGCGU--UGGCAUa---CGCC- -5'
24008 5' -53.4 NC_005262.1 + 27855 0.66 0.849841
Target:  5'- -cUGCCGCG-UCGCAAggaCGgcggcaagGCGGc -3'
miRNA:   3'- gaACGGCGCuAGCGUUg--GCaua-----CGCC- -5'
24008 5' -53.4 NC_005262.1 + 12413 0.66 0.849841
Target:  5'- -cUGCUGuCGAUCgagacgGUAGCCGagccgAUGCGGc -3'
miRNA:   3'- gaACGGC-GCUAG------CGUUGGCa----UACGCC- -5'
24008 5' -53.4 NC_005262.1 + 4791 0.66 0.849841
Target:  5'- -aUGUCGgGAUCGgAGCCGgccGCGu -3'
miRNA:   3'- gaACGGCgCUAGCgUUGGCauaCGCc -5'
24008 5' -53.4 NC_005262.1 + 40580 0.66 0.841254
Target:  5'- -gUGCCGCGAccgUCGC-GCUGacgGUGGc -3'
miRNA:   3'- gaACGGCGCU---AGCGuUGGCauaCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.