Results 1 - 20 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24008 | 5' | -53.4 | NC_005262.1 | + | 24492 | 1.11 | 0.001452 |
Target: 5'- gCUUGCCGCGAUCGCAACCGUAUGCGGa -3' miRNA: 3'- -GAACGGCGCUAGCGUUGGCAUACGCC- -5' |
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24008 | 5' | -53.4 | NC_005262.1 | + | 18980 | 0.78 | 0.245854 |
Target: 5'- --gGCCGUGGUCGgGACUGgAUGCGGc -3' miRNA: 3'- gaaCGGCGCUAGCgUUGGCaUACGCC- -5' |
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24008 | 5' | -53.4 | NC_005262.1 | + | 51993 | 0.76 | 0.331893 |
Target: 5'- gUUGCCggcgaaGCGGUCGguGCCGUucgGCGGc -3' miRNA: 3'- gAACGG------CGCUAGCguUGGCAua-CGCC- -5' |
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24008 | 5' | -53.4 | NC_005262.1 | + | 44517 | 0.76 | 0.339985 |
Target: 5'- -aUGCCGagcgacacgaGGUCGCcAUCGUGUGCGGc -3' miRNA: 3'- gaACGGCg---------CUAGCGuUGGCAUACGCC- -5' |
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24008 | 5' | -53.4 | NC_005262.1 | + | 6887 | 0.75 | 0.381672 |
Target: 5'- --gGCCGCGAUCGCGuuuucgaGCCGcGUGCc- -3' miRNA: 3'- gaaCGGCGCUAGCGU-------UGGCaUACGcc -5' |
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24008 | 5' | -53.4 | NC_005262.1 | + | 17901 | 0.75 | 0.373765 |
Target: 5'- gUUGCCGgGGUCGaacgGAUCGUAUGcCGGa -3' miRNA: 3'- gAACGGCgCUAGCg---UUGGCAUAC-GCC- -5' |
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24008 | 5' | -53.4 | NC_005262.1 | + | 41182 | 0.75 | 0.356594 |
Target: 5'- --cGCCGCGAUCGCGugCGcgcccgGCGa -3' miRNA: 3'- gaaCGGCGCUAGCGUugGCaua---CGCc -5' |
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24008 | 5' | -53.4 | NC_005262.1 | + | 35548 | 0.75 | 0.391487 |
Target: 5'- --aGCCGCGAugUCGCucGCCGgc-GCGGg -3' miRNA: 3'- gaaCGGCGCU--AGCGu-UGGCauaCGCC- -5' |
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24008 | 5' | -53.4 | NC_005262.1 | + | 48684 | 0.74 | 0.419076 |
Target: 5'- --aGCUGCGAUUGCAgGCCGag-GCGGc -3' miRNA: 3'- gaaCGGCGCUAGCGU-UGGCauaCGCC- -5' |
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24008 | 5' | -53.4 | NC_005262.1 | + | 24823 | 0.74 | 0.400552 |
Target: 5'- --aGCuCGCGAUCGCGGCCGgcgccGUGCc- -3' miRNA: 3'- gaaCG-GCGCUAGCGUUGGCa----UACGcc -5' |
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24008 | 5' | -53.4 | NC_005262.1 | + | 56177 | 0.73 | 0.487758 |
Target: 5'- --cGCCGUGAUCGCcGACUaccAUGCGGc -3' miRNA: 3'- gaaCGGCGCUAGCG-UUGGca-UACGCC- -5' |
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24008 | 5' | -53.4 | NC_005262.1 | + | 6154 | 0.73 | 0.498008 |
Target: 5'- --gGCCGCGGccugaCGCAACCccgugGUGCGGu -3' miRNA: 3'- gaaCGGCGCUa----GCGUUGGca---UACGCC- -5' |
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24008 | 5' | -53.4 | NC_005262.1 | + | 26963 | 0.72 | 0.5399 |
Target: 5'- --cGCCGgccacuCGAUCGUGACCGU--GCGGg -3' miRNA: 3'- gaaCGGC------GCUAGCGUUGGCAuaCGCC- -5' |
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24008 | 5' | -53.4 | NC_005262.1 | + | 34287 | 0.72 | 0.5399 |
Target: 5'- --aGCCGCGAUCGCGGgCGgcagcuCGGa -3' miRNA: 3'- gaaCGGCGCUAGCGUUgGCauac--GCC- -5' |
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24008 | 5' | -53.4 | NC_005262.1 | + | 41261 | 0.71 | 0.572082 |
Target: 5'- --cGCaCGCGAUCGCGGCgGUGcccuccUGCGc -3' miRNA: 3'- gaaCG-GCGCUAGCGUUGgCAU------ACGCc -5' |
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24008 | 5' | -53.4 | NC_005262.1 | + | 49260 | 0.71 | 0.604699 |
Target: 5'- --cGCCGUGcgCGCcgcugcGGCCG-AUGCGGc -3' miRNA: 3'- gaaCGGCGCuaGCG------UUGGCaUACGCC- -5' |
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24008 | 5' | -53.4 | NC_005262.1 | + | 40711 | 0.71 | 0.592703 |
Target: 5'- --gGCCGgGGUCGUugacGCCGUGauuaugcUGCGGc -3' miRNA: 3'- gaaCGGCgCUAGCGu---UGGCAU-------ACGCC- -5' |
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24008 | 5' | -53.4 | NC_005262.1 | + | 31369 | 0.71 | 0.593792 |
Target: 5'- --cGCCGCGAUCuuGGCCGcggacgacUGCGGc -3' miRNA: 3'- gaaCGGCGCUAGcgUUGGCau------ACGCC- -5' |
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24008 | 5' | -53.4 | NC_005262.1 | + | 43919 | 0.71 | 0.593792 |
Target: 5'- --cGCCGCG--CGCGGCCGgcccGCGGc -3' miRNA: 3'- gaaCGGCGCuaGCGUUGGCaua-CGCC- -5' |
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24008 | 5' | -53.4 | NC_005262.1 | + | 5079 | 0.7 | 0.61563 |
Target: 5'- --gGCgGCGcgUGCGACCGgcucgGCGGu -3' miRNA: 3'- gaaCGgCGCuaGCGUUGGCaua--CGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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