miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24008 5' -53.4 NC_005262.1 + 24492 1.11 0.001452
Target:  5'- gCUUGCCGCGAUCGCAACCGUAUGCGGa -3'
miRNA:   3'- -GAACGGCGCUAGCGUUGGCAUACGCC- -5'
24008 5' -53.4 NC_005262.1 + 18980 0.78 0.245854
Target:  5'- --gGCCGUGGUCGgGACUGgAUGCGGc -3'
miRNA:   3'- gaaCGGCGCUAGCgUUGGCaUACGCC- -5'
24008 5' -53.4 NC_005262.1 + 51993 0.76 0.331893
Target:  5'- gUUGCCggcgaaGCGGUCGguGCCGUucgGCGGc -3'
miRNA:   3'- gAACGG------CGCUAGCguUGGCAua-CGCC- -5'
24008 5' -53.4 NC_005262.1 + 44517 0.76 0.339985
Target:  5'- -aUGCCGagcgacacgaGGUCGCcAUCGUGUGCGGc -3'
miRNA:   3'- gaACGGCg---------CUAGCGuUGGCAUACGCC- -5'
24008 5' -53.4 NC_005262.1 + 41182 0.75 0.356594
Target:  5'- --cGCCGCGAUCGCGugCGcgcccgGCGa -3'
miRNA:   3'- gaaCGGCGCUAGCGUugGCaua---CGCc -5'
24008 5' -53.4 NC_005262.1 + 17901 0.75 0.373765
Target:  5'- gUUGCCGgGGUCGaacgGAUCGUAUGcCGGa -3'
miRNA:   3'- gAACGGCgCUAGCg---UUGGCAUAC-GCC- -5'
24008 5' -53.4 NC_005262.1 + 6887 0.75 0.381672
Target:  5'- --gGCCGCGAUCGCGuuuucgaGCCGcGUGCc- -3'
miRNA:   3'- gaaCGGCGCUAGCGU-------UGGCaUACGcc -5'
24008 5' -53.4 NC_005262.1 + 35548 0.75 0.391487
Target:  5'- --aGCCGCGAugUCGCucGCCGgc-GCGGg -3'
miRNA:   3'- gaaCGGCGCU--AGCGu-UGGCauaCGCC- -5'
24008 5' -53.4 NC_005262.1 + 24823 0.74 0.400552
Target:  5'- --aGCuCGCGAUCGCGGCCGgcgccGUGCc- -3'
miRNA:   3'- gaaCG-GCGCUAGCGUUGGCa----UACGcc -5'
24008 5' -53.4 NC_005262.1 + 48684 0.74 0.419076
Target:  5'- --aGCUGCGAUUGCAgGCCGag-GCGGc -3'
miRNA:   3'- gaaCGGCGCUAGCGU-UGGCauaCGCC- -5'
24008 5' -53.4 NC_005262.1 + 56177 0.73 0.487758
Target:  5'- --cGCCGUGAUCGCcGACUaccAUGCGGc -3'
miRNA:   3'- gaaCGGCGCUAGCG-UUGGca-UACGCC- -5'
24008 5' -53.4 NC_005262.1 + 6154 0.73 0.498008
Target:  5'- --gGCCGCGGccugaCGCAACCccgugGUGCGGu -3'
miRNA:   3'- gaaCGGCGCUa----GCGUUGGca---UACGCC- -5'
24008 5' -53.4 NC_005262.1 + 34287 0.72 0.5399
Target:  5'- --aGCCGCGAUCGCGGgCGgcagcuCGGa -3'
miRNA:   3'- gaaCGGCGCUAGCGUUgGCauac--GCC- -5'
24008 5' -53.4 NC_005262.1 + 26963 0.72 0.5399
Target:  5'- --cGCCGgccacuCGAUCGUGACCGU--GCGGg -3'
miRNA:   3'- gaaCGGC------GCUAGCGUUGGCAuaCGCC- -5'
24008 5' -53.4 NC_005262.1 + 41261 0.71 0.572082
Target:  5'- --cGCaCGCGAUCGCGGCgGUGcccuccUGCGc -3'
miRNA:   3'- gaaCG-GCGCUAGCGUUGgCAU------ACGCc -5'
24008 5' -53.4 NC_005262.1 + 40711 0.71 0.592703
Target:  5'- --gGCCGgGGUCGUugacGCCGUGauuaugcUGCGGc -3'
miRNA:   3'- gaaCGGCgCUAGCGu---UGGCAU-------ACGCC- -5'
24008 5' -53.4 NC_005262.1 + 43919 0.71 0.593792
Target:  5'- --cGCCGCG--CGCGGCCGgcccGCGGc -3'
miRNA:   3'- gaaCGGCGCuaGCGUUGGCaua-CGCC- -5'
24008 5' -53.4 NC_005262.1 + 31369 0.71 0.593792
Target:  5'- --cGCCGCGAUCuuGGCCGcggacgacUGCGGc -3'
miRNA:   3'- gaaCGGCGCUAGcgUUGGCau------ACGCC- -5'
24008 5' -53.4 NC_005262.1 + 49260 0.71 0.604699
Target:  5'- --cGCCGUGcgCGCcgcugcGGCCG-AUGCGGc -3'
miRNA:   3'- gaaCGGCGCuaGCG------UUGGCaUACGCC- -5'
24008 5' -53.4 NC_005262.1 + 5079 0.7 0.61563
Target:  5'- --gGCgGCGcgUGCGACCGgcucgGCGGu -3'
miRNA:   3'- gaaCGgCGCuaGCGUUGGCaua--CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.