miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24008 5' -53.4 NC_005262.1 + 5079 0.7 0.61563
Target:  5'- --gGCgGCGcgUGCGACCGgcucgGCGGu -3'
miRNA:   3'- gaaCGgCGCuaGCGUUGGCaua--CGCC- -5'
24008 5' -53.4 NC_005262.1 + 48462 0.7 0.6594
Target:  5'- -aUGCCGCgcgGAUCGCgAGCCGc--GUGGg -3'
miRNA:   3'- gaACGGCG---CUAGCG-UUGGCauaCGCC- -5'
24008 5' -53.4 NC_005262.1 + 28571 0.7 0.6594
Target:  5'- --cGCCGCGcgCGCGACgGcAUGCc- -3'
miRNA:   3'- gaaCGGCGCuaGCGUUGgCaUACGcc -5'
24008 5' -53.4 NC_005262.1 + 37596 0.7 0.670305
Target:  5'- --aGCuuCGCGA-CGguGCCGUAUGCGc -3'
miRNA:   3'- gaaCG--GCGCUaGCguUGGCAUACGCc -5'
24008 5' -53.4 NC_005262.1 + 20571 0.69 0.681175
Target:  5'- -gUGCgCGCGAUuaCGCAcucGCCGcucUGCGGa -3'
miRNA:   3'- gaACG-GCGCUA--GCGU---UGGCau-ACGCC- -5'
24008 5' -53.4 NC_005262.1 + 43508 0.69 0.681175
Target:  5'- --gGCaagGCGGUCGCAACCGUuaGCa- -3'
miRNA:   3'- gaaCGg--CGCUAGCGUUGGCAuaCGcc -5'
24008 5' -53.4 NC_005262.1 + 20808 0.69 0.681175
Target:  5'- -cUGCCgaGCGA-CGCGACCGUGaugggcUGCGc -3'
miRNA:   3'- gaACGG--CGCUaGCGUUGGCAU------ACGCc -5'
24008 5' -53.4 NC_005262.1 + 17629 0.69 0.691998
Target:  5'- -cUGCCGCcucGcgCGCGACCGcGUGCc- -3'
miRNA:   3'- gaACGGCG---CuaGCGUUGGCaUACGcc -5'
24008 5' -53.4 NC_005262.1 + 50333 0.69 0.691998
Target:  5'- gUUGCgGCGGUCGaucuCGGCCGacaccuUGCGGc -3'
miRNA:   3'- gAACGgCGCUAGC----GUUGGCau----ACGCC- -5'
24008 5' -53.4 NC_005262.1 + 44236 0.69 0.713463
Target:  5'- -cUGCC-CGAUCGCGcgcgcguccgGCCGgaacGCGGg -3'
miRNA:   3'- gaACGGcGCUAGCGU----------UGGCaua-CGCC- -5'
24008 5' -53.4 NC_005262.1 + 46555 0.69 0.713463
Target:  5'- --gGCUGCG-UCGUGGCCGgc-GCGGc -3'
miRNA:   3'- gaaCGGCGCuAGCGUUGGCauaCGCC- -5'
24008 5' -53.4 NC_005262.1 + 11430 0.69 0.713463
Target:  5'- -gUGCCGCG--CGCGAgCGgcgucuUGCGGa -3'
miRNA:   3'- gaACGGCGCuaGCGUUgGCau----ACGCC- -5'
24008 5' -53.4 NC_005262.1 + 46180 0.69 0.713463
Target:  5'- --gGUaCGCGG-CGCGGCCGUccucccaauAUGCGGa -3'
miRNA:   3'- gaaCG-GCGCUaGCGUUGGCA---------UACGCC- -5'
24008 5' -53.4 NC_005262.1 + 24733 0.69 0.724082
Target:  5'- --cGCUgGCGcgCGCGAUCGgcGUGCGGc -3'
miRNA:   3'- gaaCGG-CGCuaGCGUUGGCa-UACGCC- -5'
24008 5' -53.4 NC_005262.1 + 17540 0.69 0.724082
Target:  5'- --gGCaCGCGGUCGCGcgcgaggcggcaGCCGcg-GCGGc -3'
miRNA:   3'- gaaCG-GCGCUAGCGU------------UGGCauaCGCC- -5'
24008 5' -53.4 NC_005262.1 + 49836 0.69 0.724082
Target:  5'- --gGgCGCGggCGCcGCCGgcgucgGUGCGGc -3'
miRNA:   3'- gaaCgGCGCuaGCGuUGGCa-----UACGCC- -5'
24008 5' -53.4 NC_005262.1 + 24552 0.69 0.724082
Target:  5'- --cGCCGgcgugauccugcUGAUCGCGuccgucGCCGUGUcGCGGu -3'
miRNA:   3'- gaaCGGC------------GCUAGCGU------UGGCAUA-CGCC- -5'
24008 5' -53.4 NC_005262.1 + 62181 0.69 0.728305
Target:  5'- gUUGCCGCGGcggcgacgcaugaggUCGagaagcuacGCCGUGUGCaGGa -3'
miRNA:   3'- gAACGGCGCU---------------AGCgu-------UGGCAUACG-CC- -5'
24008 5' -53.4 NC_005262.1 + 29139 0.68 0.73461
Target:  5'- gUUGCCGCGGcUGU--UCGUgAUGCGGa -3'
miRNA:   3'- gAACGGCGCUaGCGuuGGCA-UACGCC- -5'
24008 5' -53.4 NC_005262.1 + 62107 0.68 0.73461
Target:  5'- --cGCCGCG---GCAACCGcGUcGCGGa -3'
miRNA:   3'- gaaCGGCGCuagCGUUGGCaUA-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.