miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24008 5' -53.4 NC_005262.1 + 59796 0.66 0.841254
Target:  5'- cCUUGCCgGCGA-CGUAGCgcccgCGUG-GCGGc -3'
miRNA:   3'- -GAACGG-CGCUaGCGUUG-----GCAUaCGCC- -5'
24008 5' -53.4 NC_005262.1 + 12557 0.66 0.841254
Target:  5'- -aUGCCGCGcggCGCc-CCGUGaGCGa -3'
miRNA:   3'- gaACGGCGCua-GCGuuGGCAUaCGCc -5'
24008 5' -53.4 NC_005262.1 + 40580 0.66 0.841254
Target:  5'- -gUGCCGCGAccgUCGC-GCUGacgGUGGc -3'
miRNA:   3'- gaACGGCGCU---AGCGuUGGCauaCGCC- -5'
24008 5' -53.4 NC_005262.1 + 25622 0.66 0.840384
Target:  5'- --cGCCGCGcacggacGUCGCGACgCGgAUGCu- -3'
miRNA:   3'- gaaCGGCGC-------UAGCGUUG-GCaUACGcc -5'
24008 5' -53.4 NC_005262.1 + 35317 0.67 0.835998
Target:  5'- --cGCUGcCGAUCGCGccGCCGaccuccgcauccuUGCGGa -3'
miRNA:   3'- gaaCGGC-GCUAGCGU--UGGCau-----------ACGCC- -5'
24008 5' -53.4 NC_005262.1 + 55617 0.67 0.832451
Target:  5'- -cUGCUGCG-UCGCGAagUCGaguuUGCGGa -3'
miRNA:   3'- gaACGGCGCuAGCGUU--GGCau--ACGCC- -5'
24008 5' -53.4 NC_005262.1 + 3357 0.67 0.823438
Target:  5'- --gGCCGCGGcUCGCuagauGCCGcacgaugcUAUGCGc -3'
miRNA:   3'- gaaCGGCGCU-AGCGu----UGGC--------AUACGCc -5'
24008 5' -53.4 NC_005262.1 + 29866 0.67 0.823438
Target:  5'- -gUGCCGCGccGUCcgGCAcuacGCCGg--GCGGu -3'
miRNA:   3'- gaACGGCGC--UAG--CGU----UGGCauaCGCC- -5'
24008 5' -53.4 NC_005262.1 + 32954 0.67 0.823438
Target:  5'- --cGCgGCGAaCGCucggcGCCGcacGUGCGGg -3'
miRNA:   3'- gaaCGgCGCUaGCGu----UGGCa--UACGCC- -5'
24008 5' -53.4 NC_005262.1 + 9580 0.67 0.823438
Target:  5'- --gGCCGCaaAUCGC-ACCaGUgGUGCGGa -3'
miRNA:   3'- gaaCGGCGc-UAGCGuUGG-CA-UACGCC- -5'
24008 5' -53.4 NC_005262.1 + 43426 0.67 0.823438
Target:  5'- --cGCCGCgucGAUCGCcGCCuGUucaGCGGc -3'
miRNA:   3'- gaaCGGCG---CUAGCGuUGG-CAua-CGCC- -5'
24008 5' -53.4 NC_005262.1 + 29726 0.67 0.823438
Target:  5'- -aUGCCGC--UCGCuGCCG-AUGCcGGu -3'
miRNA:   3'- gaACGGCGcuAGCGuUGGCaUACG-CC- -5'
24008 5' -53.4 NC_005262.1 + 5166 0.67 0.814227
Target:  5'- --cGCCGagcCGGUCGCAcgcGCCGccgccGCGGg -3'
miRNA:   3'- gaaCGGC---GCUAGCGU---UGGCaua--CGCC- -5'
24008 5' -53.4 NC_005262.1 + 57131 0.67 0.814227
Target:  5'- --gGCUccgGCGAguacaUCGCGGCCGUGU-CGGu -3'
miRNA:   3'- gaaCGG---CGCU-----AGCGUUGGCAUAcGCC- -5'
24008 5' -53.4 NC_005262.1 + 58897 0.67 0.804826
Target:  5'- -cUGCCGCGcugCGCGAUCaGgccgGCGGc -3'
miRNA:   3'- gaACGGCGCua-GCGUUGG-Caua-CGCC- -5'
24008 5' -53.4 NC_005262.1 + 24902 0.67 0.804826
Target:  5'- --gGCCGCGAUCGCGAgcUCGcgcuUGCc- -3'
miRNA:   3'- gaaCGGCGCUAGCGUU--GGCau--ACGcc -5'
24008 5' -53.4 NC_005262.1 + 43146 0.67 0.804826
Target:  5'- -cUGCCGCGGcgCGCGguGCCGgc--CGGg -3'
miRNA:   3'- gaACGGCGCUa-GCGU--UGGCauacGCC- -5'
24008 5' -53.4 NC_005262.1 + 11972 0.67 0.803876
Target:  5'- -gUGCCGCGGccaccuuUCGCGcgauacacgucGCCGacaGCGGg -3'
miRNA:   3'- gaACGGCGCU-------AGCGU-----------UGGCauaCGCC- -5'
24008 5' -53.4 NC_005262.1 + 6655 0.67 0.795246
Target:  5'- --aGCC-UGAUCGCGccGCuCGUcgGCGGc -3'
miRNA:   3'- gaaCGGcGCUAGCGU--UG-GCAuaCGCC- -5'
24008 5' -53.4 NC_005262.1 + 10561 0.67 0.795246
Target:  5'- --gGCCGCG--CGCAGCCGcagcguaccGCGGa -3'
miRNA:   3'- gaaCGGCGCuaGCGUUGGCaua------CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.