miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24008 5' -53.4 NC_005262.1 + 8991 0.67 0.785498
Target:  5'- --cGCCGCGcacccaagaGCgGACCGUcGUGCGGu -3'
miRNA:   3'- gaaCGGCGCuag------CG-UUGGCA-UACGCC- -5'
24008 5' -53.4 NC_005262.1 + 10563 0.68 0.765539
Target:  5'- -cUGCUGCuGGUCGCcGCUGUcGUcGCGGc -3'
miRNA:   3'- gaACGGCG-CUAGCGuUGGCA-UA-CGCC- -5'
24008 5' -53.4 NC_005262.1 + 47703 0.68 0.765539
Target:  5'- --aGCCGCGAgaaGCccgGAUCGUucuucAUGCGGu -3'
miRNA:   3'- gaaCGGCGCUag-CG---UUGGCA-----UACGCC- -5'
24008 5' -53.4 NC_005262.1 + 51901 0.68 0.765539
Target:  5'- --gGCCGCGcugaaGUCGUcGCCGag-GCGGu -3'
miRNA:   3'- gaaCGGCGC-----UAGCGuUGGCauaCGCC- -5'
24008 5' -53.4 NC_005262.1 + 12731 0.68 0.759441
Target:  5'- --cGCCGCGcgCGCuucuucuucacgguGCCGagcaAUGCGGc -3'
miRNA:   3'- gaaCGGCGCuaGCGu-------------UGGCa---UACGCC- -5'
24008 5' -53.4 NC_005262.1 + 55380 0.68 0.75535
Target:  5'- --cGCCGCGuacUCGUcggacauGCCG-AUGCGGc -3'
miRNA:   3'- gaaCGGCGCu--AGCGu------UGGCaUACGCC- -5'
24008 5' -53.4 NC_005262.1 + 50417 0.68 0.75535
Target:  5'- --cGCCGCGGagCGCGaggGCCGcGUGCa- -3'
miRNA:   3'- gaaCGGCGCUa-GCGU---UGGCaUACGcc -5'
24008 5' -53.4 NC_005262.1 + 34208 0.68 0.75535
Target:  5'- --cGcCCGCGAUCGCGGCUucggGCGa -3'
miRNA:   3'- gaaC-GGCGCUAGCGUUGGcauaCGCc -5'
24008 5' -53.4 NC_005262.1 + 12521 0.68 0.745037
Target:  5'- -aUGCCGCGcgaCGCGAUCGccuccauguUGCGGc -3'
miRNA:   3'- gaACGGCGCua-GCGUUGGCau-------ACGCC- -5'
24008 5' -53.4 NC_005262.1 + 40394 0.68 0.745037
Target:  5'- -cUGCCGCGuUCGCGcggauucagccGCgCGUcgGCGa -3'
miRNA:   3'- gaACGGCGCuAGCGU-----------UG-GCAuaCGCc -5'
24008 5' -53.4 NC_005262.1 + 48148 0.68 0.745037
Target:  5'- --cGUCGCGGcaggUGCGACCGacgcgcuUGCGGg -3'
miRNA:   3'- gaaCGGCGCUa---GCGUUGGCau-----ACGCC- -5'
24008 5' -53.4 NC_005262.1 + 62107 0.68 0.73461
Target:  5'- --cGCCGCG---GCAACCGcGUcGCGGa -3'
miRNA:   3'- gaaCGGCGCuagCGUUGGCaUA-CGCC- -5'
24008 5' -53.4 NC_005262.1 + 51610 0.68 0.73461
Target:  5'- --cGCCGUGuugCGCAcggucgucucGCCGU-UGCGGc -3'
miRNA:   3'- gaaCGGCGCua-GCGU----------UGGCAuACGCC- -5'
24008 5' -53.4 NC_005262.1 + 29139 0.68 0.73461
Target:  5'- gUUGCCGCGGcUGU--UCGUgAUGCGGa -3'
miRNA:   3'- gAACGGCGCUaGCGuuGGCA-UACGCC- -5'
24008 5' -53.4 NC_005262.1 + 62181 0.69 0.728305
Target:  5'- gUUGCCGCGGcggcgacgcaugaggUCGagaagcuacGCCGUGUGCaGGa -3'
miRNA:   3'- gAACGGCGCU---------------AGCgu-------UGGCAUACG-CC- -5'
24008 5' -53.4 NC_005262.1 + 49836 0.69 0.724082
Target:  5'- --gGgCGCGggCGCcGCCGgcgucgGUGCGGc -3'
miRNA:   3'- gaaCgGCGCuaGCGuUGGCa-----UACGCC- -5'
24008 5' -53.4 NC_005262.1 + 24552 0.69 0.724082
Target:  5'- --cGCCGgcgugauccugcUGAUCGCGuccgucGCCGUGUcGCGGu -3'
miRNA:   3'- gaaCGGC------------GCUAGCGU------UGGCAUA-CGCC- -5'
24008 5' -53.4 NC_005262.1 + 17540 0.69 0.724082
Target:  5'- --gGCaCGCGGUCGCGcgcgaggcggcaGCCGcg-GCGGc -3'
miRNA:   3'- gaaCG-GCGCUAGCGU------------UGGCauaCGCC- -5'
24008 5' -53.4 NC_005262.1 + 24733 0.69 0.724082
Target:  5'- --cGCUgGCGcgCGCGAUCGgcGUGCGGc -3'
miRNA:   3'- gaaCGG-CGCuaGCGUUGGCa-UACGCC- -5'
24008 5' -53.4 NC_005262.1 + 11430 0.69 0.713463
Target:  5'- -gUGCCGCG--CGCGAgCGgcgucuUGCGGa -3'
miRNA:   3'- gaACGGCGCuaGCGUUgGCau----ACGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.