miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24008 5' -53.4 NC_005262.1 + 3357 0.67 0.823438
Target:  5'- --gGCCGCGGcUCGCuagauGCCGcacgaugcUAUGCGc -3'
miRNA:   3'- gaaCGGCGCU-AGCGu----UGGC--------AUACGCc -5'
24008 5' -53.4 NC_005262.1 + 4791 0.66 0.849841
Target:  5'- -aUGUCGgGAUCGgAGCCGgccGCGu -3'
miRNA:   3'- gaACGGCgCUAGCgUUGGCauaCGCc -5'
24008 5' -53.4 NC_005262.1 + 5079 0.7 0.61563
Target:  5'- --gGCgGCGcgUGCGACCGgcucgGCGGu -3'
miRNA:   3'- gaaCGgCGCuaGCGUUGGCaua--CGCC- -5'
24008 5' -53.4 NC_005262.1 + 5099 0.66 0.874213
Target:  5'- -cUGCCGCuGGagGCAGCCGaAUGaucuGGa -3'
miRNA:   3'- gaACGGCG-CUagCGUUGGCaUACg---CC- -5'
24008 5' -53.4 NC_005262.1 + 5166 0.67 0.814227
Target:  5'- --cGCCGagcCGGUCGCAcgcGCCGccgccGCGGg -3'
miRNA:   3'- gaaCGGC---GCUAGCGU---UGGCaua--CGCC- -5'
24008 5' -53.4 NC_005262.1 + 5190 0.66 0.874213
Target:  5'- --gGgCGCGggCGCGGCCGgc-GCGa -3'
miRNA:   3'- gaaCgGCGCuaGCGUUGGCauaCGCc -5'
24008 5' -53.4 NC_005262.1 + 6154 0.73 0.498008
Target:  5'- --gGCCGCGGccugaCGCAACCccgugGUGCGGu -3'
miRNA:   3'- gaaCGGCGCUa----GCGUUGGca---UACGCC- -5'
24008 5' -53.4 NC_005262.1 + 6655 0.67 0.795246
Target:  5'- --aGCC-UGAUCGCGccGCuCGUcgGCGGc -3'
miRNA:   3'- gaaCGGcGCUAGCGU--UG-GCAuaCGCC- -5'
24008 5' -53.4 NC_005262.1 + 6887 0.75 0.381672
Target:  5'- --gGCCGCGAUCGCGuuuucgaGCCGcGUGCc- -3'
miRNA:   3'- gaaCGGCGCUAGCGU-------UGGCaUACGcc -5'
24008 5' -53.4 NC_005262.1 + 8991 0.67 0.785498
Target:  5'- --cGCCGCGcacccaagaGCgGACCGUcGUGCGGu -3'
miRNA:   3'- gaaCGGCGCuag------CG-UUGGCA-UACGCC- -5'
24008 5' -53.4 NC_005262.1 + 9580 0.67 0.823438
Target:  5'- --gGCCGCaaAUCGC-ACCaGUgGUGCGGa -3'
miRNA:   3'- gaaCGGCGc-UAGCGuUGG-CA-UACGCC- -5'
24008 5' -53.4 NC_005262.1 + 10561 0.67 0.795246
Target:  5'- --gGCCGCG--CGCAGCCGcagcguaccGCGGa -3'
miRNA:   3'- gaaCGGCGCuaGCGUUGGCaua------CGCC- -5'
24008 5' -53.4 NC_005262.1 + 10563 0.68 0.765539
Target:  5'- -cUGCUGCuGGUCGCcGCUGUcGUcGCGGc -3'
miRNA:   3'- gaACGGCG-CUAGCGuUGGCA-UA-CGCC- -5'
24008 5' -53.4 NC_005262.1 + 11180 0.66 0.866328
Target:  5'- --cGCCGaCGA-CGCcGCCGUgaucGUGCGc -3'
miRNA:   3'- gaaCGGC-GCUaGCGuUGGCA----UACGCc -5'
24008 5' -53.4 NC_005262.1 + 11430 0.69 0.713463
Target:  5'- -gUGCCGCG--CGCGAgCGgcgucuUGCGGa -3'
miRNA:   3'- gaACGGCGCuaGCGUUgGCau----ACGCC- -5'
24008 5' -53.4 NC_005262.1 + 11972 0.67 0.803876
Target:  5'- -gUGCCGCGGccaccuuUCGCGcgauacacgucGCCGacaGCGGg -3'
miRNA:   3'- gaACGGCGCU-------AGCGU-----------UGGCauaCGCC- -5'
24008 5' -53.4 NC_005262.1 + 12413 0.66 0.849841
Target:  5'- -cUGCUGuCGAUCgagacgGUAGCCGagccgAUGCGGc -3'
miRNA:   3'- gaACGGC-GCUAG------CGUUGGCa----UACGCC- -5'
24008 5' -53.4 NC_005262.1 + 12521 0.68 0.745037
Target:  5'- -aUGCCGCGcgaCGCGAUCGccuccauguUGCGGc -3'
miRNA:   3'- gaACGGCGCua-GCGUUGGCau-------ACGCC- -5'
24008 5' -53.4 NC_005262.1 + 12557 0.66 0.841254
Target:  5'- -aUGCCGCGcggCGCc-CCGUGaGCGa -3'
miRNA:   3'- gaACGGCGCua-GCGuuGGCAUaCGCc -5'
24008 5' -53.4 NC_005262.1 + 12731 0.68 0.759441
Target:  5'- --cGCCGCGcgCGCuucuucuucacgguGCCGagcaAUGCGGc -3'
miRNA:   3'- gaaCGGCGCuaGCGu-------------UGGCa---UACGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.