miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24008 5' -53.4 NC_005262.1 + 13059 0.66 0.874213
Target:  5'- --gGUCGCGGUCGUcgacgccgAGCCgGUcgGCGa -3'
miRNA:   3'- gaaCGGCGCUAGCG--------UUGG-CAuaCGCc -5'
24008 5' -53.4 NC_005262.1 + 15874 0.66 0.841254
Target:  5'- -gUGCCGgGGUUGCcGCCGaagAUGaGGa -3'
miRNA:   3'- gaACGGCgCUAGCGuUGGCa--UACgCC- -5'
24008 5' -53.4 NC_005262.1 + 17540 0.69 0.724082
Target:  5'- --gGCaCGCGGUCGCGcgcgaggcggcaGCCGcg-GCGGc -3'
miRNA:   3'- gaaCG-GCGCUAGCGU------------UGGCauaCGCC- -5'
24008 5' -53.4 NC_005262.1 + 17629 0.69 0.691998
Target:  5'- -cUGCCGCcucGcgCGCGACCGcGUGCc- -3'
miRNA:   3'- gaACGGCG---CuaGCGUUGGCaUACGcc -5'
24008 5' -53.4 NC_005262.1 + 17901 0.75 0.373765
Target:  5'- gUUGCCGgGGUCGaacgGAUCGUAUGcCGGa -3'
miRNA:   3'- gAACGGCgCUAGCg---UUGGCAUAC-GCC- -5'
24008 5' -53.4 NC_005262.1 + 18980 0.78 0.245854
Target:  5'- --gGCCGUGGUCGgGACUGgAUGCGGc -3'
miRNA:   3'- gaaCGGCGCUAGCgUUGGCaUACGCC- -5'
24008 5' -53.4 NC_005262.1 + 20571 0.69 0.681175
Target:  5'- -gUGCgCGCGAUuaCGCAcucGCCGcucUGCGGa -3'
miRNA:   3'- gaACG-GCGCUA--GCGU---UGGCau-ACGCC- -5'
24008 5' -53.4 NC_005262.1 + 20808 0.69 0.681175
Target:  5'- -cUGCCgaGCGA-CGCGACCGUGaugggcUGCGc -3'
miRNA:   3'- gaACGG--CGCUaGCGUUGGCAU------ACGCc -5'
24008 5' -53.4 NC_005262.1 + 20994 0.66 0.859025
Target:  5'- --cGCCGCGAgcuacggggagauggUGCuAUCGUcGUGCGGc -3'
miRNA:   3'- gaaCGGCGCUa--------------GCGuUGGCA-UACGCC- -5'
24008 5' -53.4 NC_005262.1 + 23422 0.66 0.849841
Target:  5'- --gGCCGUGGUCGagcgcguGCuCGUGcGCGGc -3'
miRNA:   3'- gaaCGGCGCUAGCgu-----UG-GCAUaCGCC- -5'
24008 5' -53.4 NC_005262.1 + 24492 1.11 0.001452
Target:  5'- gCUUGCCGCGAUCGCAACCGUAUGCGGa -3'
miRNA:   3'- -GAACGGCGCUAGCGUUGGCAUACGCC- -5'
24008 5' -53.4 NC_005262.1 + 24552 0.69 0.724082
Target:  5'- --cGCCGgcgugauccugcUGAUCGCGuccgucGCCGUGUcGCGGu -3'
miRNA:   3'- gaaCGGC------------GCUAGCGU------UGGCAUA-CGCC- -5'
24008 5' -53.4 NC_005262.1 + 24733 0.69 0.724082
Target:  5'- --cGCUgGCGcgCGCGAUCGgcGUGCGGc -3'
miRNA:   3'- gaaCGG-CGCuaGCGUUGGCa-UACGCC- -5'
24008 5' -53.4 NC_005262.1 + 24823 0.74 0.400552
Target:  5'- --aGCuCGCGAUCGCGGCCGgcgccGUGCc- -3'
miRNA:   3'- gaaCG-GCGCUAGCGUUGGCa----UACGcc -5'
24008 5' -53.4 NC_005262.1 + 24902 0.67 0.804826
Target:  5'- --gGCCGCGAUCGCGAgcUCGcgcuUGCc- -3'
miRNA:   3'- gaaCGGCGCUAGCGUU--GGCau--ACGcc -5'
24008 5' -53.4 NC_005262.1 + 25533 0.66 0.866328
Target:  5'- ---uCCGCG-UCGCGAcguCCGUGcGCGGc -3'
miRNA:   3'- gaacGGCGCuAGCGUU---GGCAUaCGCC- -5'
24008 5' -53.4 NC_005262.1 + 25622 0.66 0.840384
Target:  5'- --cGCCGCGcacggacGUCGCGACgCGgAUGCu- -3'
miRNA:   3'- gaaCGGCGC-------UAGCGUUG-GCaUACGcc -5'
24008 5' -53.4 NC_005262.1 + 26963 0.72 0.5399
Target:  5'- --cGCCGgccacuCGAUCGUGACCGU--GCGGg -3'
miRNA:   3'- gaaCGGC------GCUAGCGUUGGCAuaCGCC- -5'
24008 5' -53.4 NC_005262.1 + 27855 0.66 0.849841
Target:  5'- -cUGCCGCG-UCGCAAggaCGgcggcaagGCGGc -3'
miRNA:   3'- gaACGGCGCuAGCGUUg--GCaua-----CGCC- -5'
24008 5' -53.4 NC_005262.1 + 28571 0.7 0.6594
Target:  5'- --cGCCGCGcgCGCGACgGcAUGCc- -3'
miRNA:   3'- gaaCGGCGCuaGCGUUGgCaUACGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.