miRNA display CGI


Results 1 - 20 of 92 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24008 5' -53.4 NC_005262.1 + 63208 0.7 0.61563
Target:  5'- -gUGCUGCaAUCGUAGCCGgcgGCGa -3'
miRNA:   3'- gaACGGCGcUAGCGUUGGCauaCGCc -5'
24008 5' -53.4 NC_005262.1 + 62181 0.69 0.728305
Target:  5'- gUUGCCGCGGcggcgacgcaugaggUCGagaagcuacGCCGUGUGCaGGa -3'
miRNA:   3'- gAACGGCGCU---------------AGCgu-------UGGCAUACG-CC- -5'
24008 5' -53.4 NC_005262.1 + 62107 0.68 0.73461
Target:  5'- --cGCCGCG---GCAACCGcGUcGCGGa -3'
miRNA:   3'- gaaCGGCGCuagCGUUGGCaUA-CGCC- -5'
24008 5' -53.4 NC_005262.1 + 60169 0.66 0.858201
Target:  5'- --cGCCGUGAagGCGcucgGCCaGUggGCGGc -3'
miRNA:   3'- gaaCGGCGCUagCGU----UGG-CAuaCGCC- -5'
24008 5' -53.4 NC_005262.1 + 59796 0.66 0.841254
Target:  5'- cCUUGCCgGCGA-CGUAGCgcccgCGUG-GCGGc -3'
miRNA:   3'- -GAACGG-CGCUaGCGUUG-----GCAUaCGCC- -5'
24008 5' -53.4 NC_005262.1 + 58897 0.67 0.804826
Target:  5'- -cUGCCGCGcugCGCGAUCaGgccgGCGGc -3'
miRNA:   3'- gaACGGCGCua-GCGUUGG-Caua-CGCC- -5'
24008 5' -53.4 NC_005262.1 + 57131 0.67 0.814227
Target:  5'- --gGCUccgGCGAguacaUCGCGGCCGUGU-CGGu -3'
miRNA:   3'- gaaCGG---CGCU-----AGCGUUGGCAUAcGCC- -5'
24008 5' -53.4 NC_005262.1 + 56177 0.73 0.487758
Target:  5'- --cGCCGUGAUCGCcGACUaccAUGCGGc -3'
miRNA:   3'- gaaCGGCGCUAGCG-UUGGca-UACGCC- -5'
24008 5' -53.4 NC_005262.1 + 55617 0.67 0.832451
Target:  5'- -cUGCUGCG-UCGCGAagUCGaguuUGCGGa -3'
miRNA:   3'- gaACGGCGCuAGCGUU--GGCau--ACGCC- -5'
24008 5' -53.4 NC_005262.1 + 55380 0.68 0.75535
Target:  5'- --cGCCGCGuacUCGUcggacauGCCG-AUGCGGc -3'
miRNA:   3'- gaaCGGCGCu--AGCGu------UGGCaUACGCC- -5'
24008 5' -53.4 NC_005262.1 + 54565 0.66 0.849841
Target:  5'- --cGCCGCGuUCGCGAgCGag-GCGc -3'
miRNA:   3'- gaaCGGCGCuAGCGUUgGCauaCGCc -5'
24008 5' -53.4 NC_005262.1 + 52887 0.66 0.866328
Target:  5'- -cUGCCacuGCGAauccuugaaGCGGCCGUA-GCGGu -3'
miRNA:   3'- gaACGG---CGCUag-------CGUUGGCAUaCGCC- -5'
24008 5' -53.4 NC_005262.1 + 51993 0.76 0.331893
Target:  5'- gUUGCCggcgaaGCGGUCGguGCCGUucgGCGGc -3'
miRNA:   3'- gAACGG------CGCUAGCguUGGCAua-CGCC- -5'
24008 5' -53.4 NC_005262.1 + 51901 0.68 0.765539
Target:  5'- --gGCCGCGcugaaGUCGUcGCCGag-GCGGu -3'
miRNA:   3'- gaaCGGCGC-----UAGCGuUGGCauaCGCC- -5'
24008 5' -53.4 NC_005262.1 + 51610 0.68 0.73461
Target:  5'- --cGCCGUGuugCGCAcggucgucucGCCGU-UGCGGc -3'
miRNA:   3'- gaaCGGCGCua-GCGU----------UGGCAuACGCC- -5'
24008 5' -53.4 NC_005262.1 + 50417 0.68 0.75535
Target:  5'- --cGCCGCGGagCGCGaggGCCGcGUGCa- -3'
miRNA:   3'- gaaCGGCGCUa-GCGU---UGGCaUACGcc -5'
24008 5' -53.4 NC_005262.1 + 50333 0.69 0.691998
Target:  5'- gUUGCgGCGGUCGaucuCGGCCGacaccuUGCGGc -3'
miRNA:   3'- gAACGgCGCUAGC----GUUGGCau----ACGCC- -5'
24008 5' -53.4 NC_005262.1 + 49836 0.69 0.724082
Target:  5'- --gGgCGCGggCGCcGCCGgcgucgGUGCGGc -3'
miRNA:   3'- gaaCgGCGCuaGCGuUGGCa-----UACGCC- -5'
24008 5' -53.4 NC_005262.1 + 49260 0.71 0.604699
Target:  5'- --cGCCGUGcgCGCcgcugcGGCCG-AUGCGGc -3'
miRNA:   3'- gaaCGGCGCuaGCG------UUGGCaUACGCC- -5'
24008 5' -53.4 NC_005262.1 + 48684 0.74 0.419076
Target:  5'- --aGCUGCGAUUGCAgGCCGag-GCGGc -3'
miRNA:   3'- gaaCGGCGCUAGCGU-UGGCauaCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.