miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24008 5' -53.4 NC_005262.1 + 57131 0.67 0.814227
Target:  5'- --gGCUccgGCGAguacaUCGCGGCCGUGU-CGGu -3'
miRNA:   3'- gaaCGG---CGCU-----AGCGUUGGCAUAcGCC- -5'
24008 5' -53.4 NC_005262.1 + 24552 0.69 0.724082
Target:  5'- --cGCCGgcgugauccugcUGAUCGCGuccgucGCCGUGUcGCGGu -3'
miRNA:   3'- gaaCGGC------------GCUAGCGU------UGGCAUA-CGCC- -5'
24008 5' -53.4 NC_005262.1 + 62107 0.68 0.73461
Target:  5'- --cGCCGCG---GCAACCGcGUcGCGGa -3'
miRNA:   3'- gaaCGGCGCuagCGUUGGCaUA-CGCC- -5'
24008 5' -53.4 NC_005262.1 + 12521 0.68 0.745037
Target:  5'- -aUGCCGCGcgaCGCGAUCGccuccauguUGCGGc -3'
miRNA:   3'- gaACGGCGCua-GCGUUGGCau-------ACGCC- -5'
24008 5' -53.4 NC_005262.1 + 40394 0.68 0.745037
Target:  5'- -cUGCCGCGuUCGCGcggauucagccGCgCGUcgGCGa -3'
miRNA:   3'- gaACGGCGCuAGCGU-----------UG-GCAuaCGCc -5'
24008 5' -53.4 NC_005262.1 + 34208 0.68 0.75535
Target:  5'- --cGcCCGCGAUCGCGGCUucggGCGa -3'
miRNA:   3'- gaaC-GGCGCUAGCGUUGGcauaCGCc -5'
24008 5' -53.4 NC_005262.1 + 50417 0.68 0.75535
Target:  5'- --cGCCGCGGagCGCGaggGCCGcGUGCa- -3'
miRNA:   3'- gaaCGGCGCUa-GCGU---UGGCaUACGcc -5'
24008 5' -53.4 NC_005262.1 + 10561 0.67 0.795246
Target:  5'- --gGCCGCG--CGCAGCCGcagcguaccGCGGa -3'
miRNA:   3'- gaaCGGCGCuaGCGUUGGCaua------CGCC- -5'
24008 5' -53.4 NC_005262.1 + 58897 0.67 0.804826
Target:  5'- -cUGCCGCGcugCGCGAUCaGgccgGCGGc -3'
miRNA:   3'- gaACGGCGCua-GCGUUGG-Caua-CGCC- -5'
24008 5' -53.4 NC_005262.1 + 17540 0.69 0.724082
Target:  5'- --gGCaCGCGGUCGCGcgcgaggcggcaGCCGcg-GCGGc -3'
miRNA:   3'- gaaCG-GCGCUAGCGU------------UGGCauaCGCC- -5'
24008 5' -53.4 NC_005262.1 + 24733 0.69 0.724082
Target:  5'- --cGCUgGCGcgCGCGAUCGgcGUGCGGc -3'
miRNA:   3'- gaaCGG-CGCuaGCGUUGGCa-UACGCC- -5'
24008 5' -53.4 NC_005262.1 + 43508 0.69 0.681175
Target:  5'- --gGCaagGCGGUCGCAACCGUuaGCa- -3'
miRNA:   3'- gaaCGg--CGCUAGCGUUGGCAuaCGcc -5'
24008 5' -53.4 NC_005262.1 + 41182 0.75 0.356594
Target:  5'- --cGCCGCGAUCGCGugCGcgcccgGCGa -3'
miRNA:   3'- gaaCGGCGCUAGCGUugGCaua---CGCc -5'
24008 5' -53.4 NC_005262.1 + 6887 0.75 0.381672
Target:  5'- --gGCCGCGAUCGCGuuuucgaGCCGcGUGCc- -3'
miRNA:   3'- gaaCGGCGCUAGCGU-------UGGCaUACGcc -5'
24008 5' -53.4 NC_005262.1 + 35548 0.75 0.391487
Target:  5'- --aGCCGCGAugUCGCucGCCGgc-GCGGg -3'
miRNA:   3'- gaaCGGCGCU--AGCGu-UGGCauaCGCC- -5'
24008 5' -53.4 NC_005262.1 + 24823 0.74 0.400552
Target:  5'- --aGCuCGCGAUCGCGGCCGgcgccGUGCc- -3'
miRNA:   3'- gaaCG-GCGCUAGCGUUGGCa----UACGcc -5'
24008 5' -53.4 NC_005262.1 + 56177 0.73 0.487758
Target:  5'- --cGCCGUGAUCGCcGACUaccAUGCGGc -3'
miRNA:   3'- gaaCGGCGCUAGCG-UUGGca-UACGCC- -5'
24008 5' -53.4 NC_005262.1 + 5079 0.7 0.61563
Target:  5'- --gGCgGCGcgUGCGACCGgcucgGCGGu -3'
miRNA:   3'- gaaCGgCGCuaGCGUUGGCaua--CGCC- -5'
24008 5' -53.4 NC_005262.1 + 28571 0.7 0.6594
Target:  5'- --cGCCGCGcgCGCGACgGcAUGCc- -3'
miRNA:   3'- gaaCGGCGCuaGCGUUGgCaUACGcc -5'
24008 5' -53.4 NC_005262.1 + 48462 0.7 0.6594
Target:  5'- -aUGCCGCgcgGAUCGCgAGCCGc--GUGGg -3'
miRNA:   3'- gaACGGCG---CUAGCG-UUGGCauaCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.