Results 21 - 40 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24008 | 5' | -53.4 | NC_005262.1 | + | 6887 | 0.75 | 0.381672 |
Target: 5'- --gGCCGCGAUCGCGuuuucgaGCCGcGUGCc- -3' miRNA: 3'- gaaCGGCGCUAGCGU-------UGGCaUACGcc -5' |
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24008 | 5' | -53.4 | NC_005262.1 | + | 35548 | 0.75 | 0.391487 |
Target: 5'- --aGCCGCGAugUCGCucGCCGgc-GCGGg -3' miRNA: 3'- gaaCGGCGCU--AGCGu-UGGCauaCGCC- -5' |
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24008 | 5' | -53.4 | NC_005262.1 | + | 24823 | 0.74 | 0.400552 |
Target: 5'- --aGCuCGCGAUCGCGGCCGgcgccGUGCc- -3' miRNA: 3'- gaaCG-GCGCUAGCGUUGGCa----UACGcc -5' |
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24008 | 5' | -53.4 | NC_005262.1 | + | 56177 | 0.73 | 0.487758 |
Target: 5'- --cGCCGUGAUCGCcGACUaccAUGCGGc -3' miRNA: 3'- gaaCGGCGCUAGCG-UUGGca-UACGCC- -5' |
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24008 | 5' | -53.4 | NC_005262.1 | + | 5079 | 0.7 | 0.61563 |
Target: 5'- --gGCgGCGcgUGCGACCGgcucgGCGGu -3' miRNA: 3'- gaaCGgCGCuaGCGUUGGCaua--CGCC- -5' |
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24008 | 5' | -53.4 | NC_005262.1 | + | 28571 | 0.7 | 0.6594 |
Target: 5'- --cGCCGCGcgCGCGACgGcAUGCc- -3' miRNA: 3'- gaaCGGCGCuaGCGUUGgCaUACGcc -5' |
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24008 | 5' | -53.4 | NC_005262.1 | + | 48462 | 0.7 | 0.6594 |
Target: 5'- -aUGCCGCgcgGAUCGCgAGCCGc--GUGGg -3' miRNA: 3'- gaACGGCG---CUAGCG-UUGGCauaCGCC- -5' |
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24008 | 5' | -53.4 | NC_005262.1 | + | 40394 | 0.68 | 0.745037 |
Target: 5'- -cUGCCGCGuUCGCGcggauucagccGCgCGUcgGCGa -3' miRNA: 3'- gaACGGCGCuAGCGU-----------UG-GCAuaCGCc -5' |
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24008 | 5' | -53.4 | NC_005262.1 | + | 12521 | 0.68 | 0.745037 |
Target: 5'- -aUGCCGCGcgaCGCGAUCGccuccauguUGCGGc -3' miRNA: 3'- gaACGGCGCua-GCGUUGGCau-------ACGCC- -5' |
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24008 | 5' | -53.4 | NC_005262.1 | + | 62107 | 0.68 | 0.73461 |
Target: 5'- --cGCCGCG---GCAACCGcGUcGCGGa -3' miRNA: 3'- gaaCGGCGCuagCGUUGGCaUA-CGCC- -5' |
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24008 | 5' | -53.4 | NC_005262.1 | + | 24552 | 0.69 | 0.724082 |
Target: 5'- --cGCCGgcgugauccugcUGAUCGCGuccgucGCCGUGUcGCGGu -3' miRNA: 3'- gaaCGGC------------GCUAGCGU------UGGCAUA-CGCC- -5' |
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24008 | 5' | -53.4 | NC_005262.1 | + | 17540 | 0.69 | 0.724082 |
Target: 5'- --gGCaCGCGGUCGCGcgcgaggcggcaGCCGcg-GCGGc -3' miRNA: 3'- gaaCG-GCGCUAGCGU------------UGGCauaCGCC- -5' |
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24008 | 5' | -53.4 | NC_005262.1 | + | 24733 | 0.69 | 0.724082 |
Target: 5'- --cGCUgGCGcgCGCGAUCGgcGUGCGGc -3' miRNA: 3'- gaaCGG-CGCuaGCGUUGGCa-UACGCC- -5' |
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24008 | 5' | -53.4 | NC_005262.1 | + | 43508 | 0.69 | 0.681175 |
Target: 5'- --gGCaagGCGGUCGCAACCGUuaGCa- -3' miRNA: 3'- gaaCGg--CGCUAGCGUUGGCAuaCGcc -5' |
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24008 | 5' | -53.4 | NC_005262.1 | + | 37206 | 0.66 | 0.866328 |
Target: 5'- --gGCgGCuGAUCGCGaaagguGCCGauauUGCGGa -3' miRNA: 3'- gaaCGgCG-CUAGCGU------UGGCau--ACGCC- -5' |
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24008 | 5' | -53.4 | NC_005262.1 | + | 52887 | 0.66 | 0.866328 |
Target: 5'- -cUGCCacuGCGAauccuugaaGCGGCCGUA-GCGGu -3' miRNA: 3'- gaACGG---CGCUag-------CGUUGGCAUaCGCC- -5' |
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24008 | 5' | -53.4 | NC_005262.1 | + | 43953 | 0.66 | 0.866328 |
Target: 5'- -aUGCgCGCGAUCGC-GCCGagguccUGcCGGc -3' miRNA: 3'- gaACG-GCGCUAGCGuUGGCau----AC-GCC- -5' |
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24008 | 5' | -53.4 | NC_005262.1 | + | 48195 | 0.66 | 0.873435 |
Target: 5'- uCUUGCgCGCGGcgcgucacaucaUCGCGcgucggcGCCGg--GCGGc -3' miRNA: 3'- -GAACG-GCGCU------------AGCGU-------UGGCauaCGCC- -5' |
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24008 | 5' | -53.4 | NC_005262.1 | + | 13059 | 0.66 | 0.874213 |
Target: 5'- --gGUCGCGGUCGUcgacgccgAGCCgGUcgGCGa -3' miRNA: 3'- gaaCGGCGCUAGCG--------UUGG-CAuaCGCc -5' |
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24008 | 5' | -53.4 | NC_005262.1 | + | 18980 | 0.78 | 0.245854 |
Target: 5'- --gGCCGUGGUCGgGACUGgAUGCGGc -3' miRNA: 3'- gaaCGGCGCUAGCgUUGGCaUACGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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