miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24008 5' -53.4 NC_005262.1 + 5099 0.66 0.874213
Target:  5'- -cUGCCGCuGGagGCAGCCGaAUGaucuGGa -3'
miRNA:   3'- gaACGGCG-CUagCGUUGGCaUACg---CC- -5'
24008 5' -53.4 NC_005262.1 + 9580 0.67 0.823438
Target:  5'- --gGCCGCaaAUCGC-ACCaGUgGUGCGGa -3'
miRNA:   3'- gaaCGGCGc-UAGCGuUGG-CA-UACGCC- -5'
24008 5' -53.4 NC_005262.1 + 5166 0.67 0.814227
Target:  5'- --cGCCGagcCGGUCGCAcgcGCCGccgccGCGGg -3'
miRNA:   3'- gaaCGGC---GCUAGCGU---UGGCaua--CGCC- -5'
24008 5' -53.4 NC_005262.1 + 18980 0.78 0.245854
Target:  5'- --gGCCGUGGUCGgGACUGgAUGCGGc -3'
miRNA:   3'- gaaCGGCGCUAGCgUUGGCaUACGCC- -5'
24008 5' -53.4 NC_005262.1 + 52887 0.66 0.866328
Target:  5'- -cUGCCacuGCGAauccuugaaGCGGCCGUA-GCGGu -3'
miRNA:   3'- gaACGG---CGCUag-------CGUUGGCAUaCGCC- -5'
24008 5' -53.4 NC_005262.1 + 37206 0.66 0.866328
Target:  5'- --gGCgGCuGAUCGCGaaagguGCCGauauUGCGGa -3'
miRNA:   3'- gaaCGgCG-CUAGCGU------UGGCau--ACGCC- -5'
24008 5' -53.4 NC_005262.1 + 23422 0.66 0.849841
Target:  5'- --gGCCGUGGUCGagcgcguGCuCGUGcGCGGc -3'
miRNA:   3'- gaaCGGCGCUAGCgu-----UG-GCAUaCGCC- -5'
24008 5' -53.4 NC_005262.1 + 12557 0.66 0.841254
Target:  5'- -aUGCCGCGcggCGCc-CCGUGaGCGa -3'
miRNA:   3'- gaACGGCGCua-GCGuuGGCAUaCGCc -5'
24008 5' -53.4 NC_005262.1 + 25622 0.66 0.840384
Target:  5'- --cGCCGCGcacggacGUCGCGACgCGgAUGCu- -3'
miRNA:   3'- gaaCGGCGC-------UAGCGUUG-GCaUACGcc -5'
24008 5' -53.4 NC_005262.1 + 32954 0.67 0.823438
Target:  5'- --cGCgGCGAaCGCucggcGCCGcacGUGCGGg -3'
miRNA:   3'- gaaCGgCGCUaGCGu----UGGCa--UACGCC- -5'
24008 5' -53.4 NC_005262.1 + 29726 0.67 0.823438
Target:  5'- -aUGCCGC--UCGCuGCCG-AUGCcGGu -3'
miRNA:   3'- gaACGGCGcuAGCGuUGGCaUACG-CC- -5'
24008 5' -53.4 NC_005262.1 + 15874 0.66 0.841254
Target:  5'- -gUGCCGgGGUUGCcGCCGaagAUGaGGa -3'
miRNA:   3'- gaACGGCgCUAGCGuUGGCa--UACgCC- -5'
24008 5' -53.4 NC_005262.1 + 13059 0.66 0.874213
Target:  5'- --gGUCGCGGUCGUcgacgccgAGCCgGUcgGCGa -3'
miRNA:   3'- gaaCGGCGCUAGCG--------UUGG-CAuaCGCc -5'
24008 5' -53.4 NC_005262.1 + 55617 0.67 0.832451
Target:  5'- -cUGCUGCG-UCGCGAagUCGaguuUGCGGa -3'
miRNA:   3'- gaACGGCGCuAGCGUU--GGCau--ACGCC- -5'
24008 5' -53.4 NC_005262.1 + 48195 0.66 0.873435
Target:  5'- uCUUGCgCGCGGcgcgucacaucaUCGCGcgucggcGCCGg--GCGGc -3'
miRNA:   3'- -GAACG-GCGCU------------AGCGU-------UGGCauaCGCC- -5'
24008 5' -53.4 NC_005262.1 + 59796 0.66 0.841254
Target:  5'- cCUUGCCgGCGA-CGUAGCgcccgCGUG-GCGGc -3'
miRNA:   3'- -GAACGG-CGCUaGCGUUG-----GCAUaCGCC- -5'
24008 5' -53.4 NC_005262.1 + 29866 0.67 0.823438
Target:  5'- -gUGCCGCGccGUCcgGCAcuacGCCGg--GCGGu -3'
miRNA:   3'- gaACGGCGC--UAG--CGU----UGGCauaCGCC- -5'
24008 5' -53.4 NC_005262.1 + 43426 0.67 0.823438
Target:  5'- --cGCCGCgucGAUCGCcGCCuGUucaGCGGc -3'
miRNA:   3'- gaaCGGCG---CUAGCGuUGG-CAua-CGCC- -5'
24008 5' -53.4 NC_005262.1 + 43953 0.66 0.866328
Target:  5'- -aUGCgCGCGAUCGC-GCCGagguccUGcCGGc -3'
miRNA:   3'- gaACG-GCGCUAGCGuUGGCau----AC-GCC- -5'
24008 5' -53.4 NC_005262.1 + 20994 0.66 0.859025
Target:  5'- --cGCCGCGAgcuacggggagauggUGCuAUCGUcGUGCGGc -3'
miRNA:   3'- gaaCGGCGCUa--------------GCGuUGGCA-UACGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.