miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24009 3' -56.3 NC_005262.1 + 30736 0.66 0.721333
Target:  5'- -uGuCCGCGUuguccGA-CGCGGGCACCuuGCCGa -3'
miRNA:   3'- cuC-GGUGUA-----CUaGCGCCUGUGG--UGGC- -5'
24009 3' -56.3 NC_005262.1 + 50963 0.66 0.721333
Target:  5'- cGAGCgCGCcgugcGAUUGCGucGGCACCugCGg -3'
miRNA:   3'- -CUCG-GUGua---CUAGCGC--CUGUGGugGC- -5'
24009 3' -56.3 NC_005262.1 + 42566 0.66 0.721333
Target:  5'- cGAGCCGCuucccUCGCucgaauGGaacGCGCCGCCGg -3'
miRNA:   3'- -CUCGGUGuacu-AGCG------CC---UGUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 19048 0.66 0.721333
Target:  5'- --uCCACAUgucGAUUGCGaggcccuuGACGCCGCCGc -3'
miRNA:   3'- cucGGUGUA---CUAGCGC--------CUGUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 10512 0.66 0.721333
Target:  5'- cGGCCAgCAgcagCGCGGGgGCgGCCGa -3'
miRNA:   3'- cUCGGU-GUacuaGCGCCUgUGgUGGC- -5'
24009 3' -56.3 NC_005262.1 + 27621 0.66 0.721333
Target:  5'- uGAGCuCGCccucgucgGUGcgCGCGGGCACgaGCUGg -3'
miRNA:   3'- -CUCG-GUG--------UACuaGCGCCUGUGg-UGGC- -5'
24009 3' -56.3 NC_005262.1 + 49592 0.66 0.721333
Target:  5'- aGGCCcuCGgcGAUCGCGcugcgcGCACCGCCGg -3'
miRNA:   3'- cUCGGu-GUa-CUAGCGCc-----UGUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 40395 0.66 0.710813
Target:  5'- -uGCCGCGUucgCGCGGAUucaGCCGCgCGu -3'
miRNA:   3'- cuCGGUGUAcuaGCGCCUG---UGGUG-GC- -5'
24009 3' -56.3 NC_005262.1 + 22582 0.66 0.700219
Target:  5'- cGGCCGCAUG--CGCGG-CGCUGCUc -3'
miRNA:   3'- cUCGGUGUACuaGCGCCuGUGGUGGc -5'
24009 3' -56.3 NC_005262.1 + 13070 0.66 0.700219
Target:  5'- -cGUCACGcgcgGGUCGCGGucgucgACGCCgaGCCGg -3'
miRNA:   3'- cuCGGUGUa---CUAGCGCC------UGUGG--UGGC- -5'
24009 3' -56.3 NC_005262.1 + 23793 0.66 0.700219
Target:  5'- -cGCCGCGUGGUCGaccgugcgcCGGuagacccacacGCGCCGCuCGg -3'
miRNA:   3'- cuCGGUGUACUAGC---------GCC-----------UGUGGUG-GC- -5'
24009 3' -56.3 NC_005262.1 + 45206 0.66 0.700219
Target:  5'- uGGCgCGCgGUGuUCGCGGcAC-CCGCCGa -3'
miRNA:   3'- cUCG-GUG-UACuAGCGCC-UGuGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 34019 0.66 0.700219
Target:  5'- -uGCCGCGUGcccgcCGCGaGcucgaGCACCGCCGc -3'
miRNA:   3'- cuCGGUGUACua---GCGC-C-----UGUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 12249 0.66 0.700219
Target:  5'- cGGUCGCGUcGAUgGuCGGGCACCugucgaucgcgGCCGg -3'
miRNA:   3'- cUCGGUGUA-CUAgC-GCCUGUGG-----------UGGC- -5'
24009 3' -56.3 NC_005262.1 + 29749 0.66 0.68956
Target:  5'- cGGGCUGCGcGggCGCGGGCggcaugccgcucGCUGCCGa -3'
miRNA:   3'- -CUCGGUGUaCuaGCGCCUG------------UGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 41968 0.66 0.68956
Target:  5'- -uGCCGCGccuGUUGCcuGACACCGCCGc -3'
miRNA:   3'- cuCGGUGUac-UAGCGc-CUGUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 60099 0.66 0.68956
Target:  5'- cGGGCacgaucaACAUGGUCGggcacgaGGGCGCCAgCGu -3'
miRNA:   3'- -CUCGg------UGUACUAGCg------CCUGUGGUgGC- -5'
24009 3' -56.3 NC_005262.1 + 31369 0.66 0.688492
Target:  5'- -cGCCGCGaucuUGGcCGCGGACgacugcgGCUGCCGa -3'
miRNA:   3'- cuCGGUGU----ACUaGCGCCUG-------UGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 31274 0.66 0.679922
Target:  5'- cAGCCGCAgucguccgcggccaaGAUCGCGGcgACAaugggucuguCCGCCGa -3'
miRNA:   3'- cUCGGUGUa--------------CUAGCGCC--UGU----------GGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 41733 0.66 0.678848
Target:  5'- aGAGCCGCAcGA-CGgGGAuCACgACCc -3'
miRNA:   3'- -CUCGGUGUaCUaGCgCCU-GUGgUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.