miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24009 3' -56.3 NC_005262.1 + 51049 0.7 0.44815
Target:  5'- cGGgCACAUcAUCGaCGGGCACCAUCa -3'
miRNA:   3'- cUCgGUGUAcUAGC-GCCUGUGGUGGc -5'
24009 3' -56.3 NC_005262.1 + 55166 0.7 0.447186
Target:  5'- cGGCCGCGaacaucaUGGUCGCGGACGagcagaauuuCCACaCGc -3'
miRNA:   3'- cUCGGUGU-------ACUAGCGCCUGU----------GGUG-GC- -5'
24009 3' -56.3 NC_005262.1 + 46248 0.69 0.528714
Target:  5'- -cGUCGCGUcggaGAUCGCGuugaGGCGCCGCUGg -3'
miRNA:   3'- cuCGGUGUA----CUAGCGC----CUGUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 24821 0.69 0.508006
Target:  5'- cGAGCuCGC--GAUCGCGGccgGCGCCguGCCGa -3'
miRNA:   3'- -CUCG-GUGuaCUAGCGCC---UGUGG--UGGC- -5'
24009 3' -56.3 NC_005262.1 + 6973 0.69 0.539184
Target:  5'- cGGCUcgaaaACGcGAUCGCGGccgGCAUCGCCGa -3'
miRNA:   3'- cUCGG-----UGUaCUAGCGCC---UGUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 30410 0.69 0.518319
Target:  5'- cGAGCCGCGUG--CGCuGGACGgCGCuCGa -3'
miRNA:   3'- -CUCGGUGUACuaGCG-CCUGUgGUG-GC- -5'
24009 3' -56.3 NC_005262.1 + 32332 0.69 0.528714
Target:  5'- uGGGCCgucaggcagGCGUGAUCGCcuacGGCACgGCCa -3'
miRNA:   3'- -CUCGG---------UGUACUAGCGc---CUGUGgUGGc -5'
24009 3' -56.3 NC_005262.1 + 55779 0.69 0.487649
Target:  5'- cGGCgACAUcGUUGCGGGCuucgagcagaacGCCGCCGg -3'
miRNA:   3'- cUCGgUGUAcUAGCGCCUG------------UGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 10856 0.69 0.543393
Target:  5'- gGGGCgGCAUGAgugagggCGCGGuaaugggugccacggGCACCAUCa -3'
miRNA:   3'- -CUCGgUGUACUa------GCGCC---------------UGUGGUGGc -5'
24009 3' -56.3 NC_005262.1 + 56060 0.69 0.529757
Target:  5'- gGGGCaggacaucauccugaACGUGAUCGCGGACG--GCCGu -3'
miRNA:   3'- -CUCGg--------------UGUACUAGCGCCUGUggUGGC- -5'
24009 3' -56.3 NC_005262.1 + 27172 0.69 0.528714
Target:  5'- cGGCCGCAUGGUguggugccgugcUGUGuGGCACUAUCGg -3'
miRNA:   3'- cUCGGUGUACUA------------GCGC-CUGUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 48477 0.69 0.508006
Target:  5'- cGAGCCGCGUGggCaCGGGCGgCGCg- -3'
miRNA:   3'- -CUCGGUGUACuaGcGCCUGUgGUGgc -5'
24009 3' -56.3 NC_005262.1 + 51560 0.69 0.497781
Target:  5'- --aCCACGUGGUCGCGcGcggagcuugagcGCGCCGCCc -3'
miRNA:   3'- cucGGUGUACUAGCGC-C------------UGUGGUGGc -5'
24009 3' -56.3 NC_005262.1 + 34288 0.68 0.560328
Target:  5'- aAGCCGC--GAUCGCGGGCGgCAgCu -3'
miRNA:   3'- cUCGGUGuaCUAGCGCCUGUgGUgGc -5'
24009 3' -56.3 NC_005262.1 + 49777 0.68 0.560328
Target:  5'- -cGUCGCGguucaGGUUGCGcGCGCCGCCGa -3'
miRNA:   3'- cuCGGUGUa----CUAGCGCcUGUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 2075 0.68 0.581695
Target:  5'- -uGCgCACAUGGUCGCuuccggGGGCAUgGCCc -3'
miRNA:   3'- cuCG-GUGUACUAGCG------CCUGUGgUGGc -5'
24009 3' -56.3 NC_005262.1 + 49328 0.68 0.570988
Target:  5'- uGGUCGCGgaccucGcgCGCGGACugcgcGCCGCCGa -3'
miRNA:   3'- cUCGGUGUa-----CuaGCGCCUG-----UGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 45078 0.68 0.570988
Target:  5'- -cGCCGCcUGccgCGCGGACugCugCa -3'
miRNA:   3'- cuCGGUGuACua-GCGCCUGugGugGc -5'
24009 3' -56.3 NC_005262.1 + 30204 0.68 0.581695
Target:  5'- cAGCgGCAcGAUCGUGGGCuucgcgGCgGCCGg -3'
miRNA:   3'- cUCGgUGUaCUAGCGCCUG------UGgUGGC- -5'
24009 3' -56.3 NC_005262.1 + 57529 0.68 0.603224
Target:  5'- -cGCCGCGgcaucCGCGGACGgUGCCGg -3'
miRNA:   3'- cuCGGUGUacua-GCGCCUGUgGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.