miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24009 3' -56.3 NC_005262.1 + 24694 1.09 0.001001
Target:  5'- uGAGCCACAUGAUCGCGGACACCACCGa -3'
miRNA:   3'- -CUCGGUGUACUAGCGCCUGUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 38534 0.82 0.079427
Target:  5'- aGAGCUACAcGGUCGCGGugacgaucgGCACCGCCGc -3'
miRNA:   3'- -CUCGGUGUaCUAGCGCC---------UGUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 49844 0.79 0.127582
Target:  5'- gGAGCC-UcgGG-CGCGGGCGCCGCCGg -3'
miRNA:   3'- -CUCGGuGuaCUaGCGCCUGUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 11189 0.76 0.20156
Target:  5'- -cGCCGcCGUGAUCGUGcGCGCCACCu -3'
miRNA:   3'- cuCGGU-GUACUAGCGCcUGUGGUGGc -5'
24009 3' -56.3 NC_005262.1 + 9005 0.76 0.20691
Target:  5'- cGGCCGCAUGAUaggGCGGACGCacgaACCc -3'
miRNA:   3'- cUCGGUGUACUAg--CGCCUGUGg---UGGc -5'
24009 3' -56.3 NC_005262.1 + 40671 0.73 0.295319
Target:  5'- -cGCCAcCGUcagcgcgacGGUCGCGG-CACCGCCGg -3'
miRNA:   3'- cuCGGU-GUA---------CUAGCGCCuGUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 33374 0.73 0.302647
Target:  5'- -cGCCGgcCGUGAUCGUcGACGCCGCCc -3'
miRNA:   3'- cuCGGU--GUACUAGCGcCUGUGGUGGc -5'
24009 3' -56.3 NC_005262.1 + 42768 0.73 0.325467
Target:  5'- gGGGCCACGcg--UGCGGGCGCCACgGc -3'
miRNA:   3'- -CUCGGUGUacuaGCGCCUGUGGUGgC- -5'
24009 3' -56.3 NC_005262.1 + 41102 0.72 0.361202
Target:  5'- cGGGCUgaaGCGaGAUCGCGGugccaucagcagcgaGCGCCGCCGc -3'
miRNA:   3'- -CUCGG---UGUaCUAGCGCC---------------UGUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 57191 0.72 0.366282
Target:  5'- uGAGCUgcgugccguggaACAUGAUCG-GGAaGCCGCCGa -3'
miRNA:   3'- -CUCGG------------UGUACUAGCgCCUgUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 49724 0.72 0.374857
Target:  5'- aGGCCGCc-GAUCGC-GAgGCCACCGa -3'
miRNA:   3'- cUCGGUGuaCUAGCGcCUgUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 24824 0.71 0.39241
Target:  5'- cGGCCGCAcgccGAUCGCGcGCGCCAgCGc -3'
miRNA:   3'- cUCGGUGUa---CUAGCGCcUGUGGUgGC- -5'
24009 3' -56.3 NC_005262.1 + 5177 0.71 0.39241
Target:  5'- cGGCCgGCGUcgcGggCGCGGGCGCgGCCGg -3'
miRNA:   3'- cUCGG-UGUA---CuaGCGCCUGUGgUGGC- -5'
24009 3' -56.3 NC_005262.1 + 22894 0.71 0.41972
Target:  5'- aGAGCaCGCAUccucGAUCGCGGaagacugcuacGCGCuCGCCGa -3'
miRNA:   3'- -CUCG-GUGUA----CUAGCGCC-----------UGUG-GUGGC- -5'
24009 3' -56.3 NC_005262.1 + 15897 0.71 0.429076
Target:  5'- -cGCCGCGUGcgCGCGacguGGCGCCGCg- -3'
miRNA:   3'- cuCGGUGUACuaGCGC----CUGUGGUGgc -5'
24009 3' -56.3 NC_005262.1 + 24416 0.71 0.429076
Target:  5'- aGAGCCGCAUgucGAUCGCGccgACCAUCGc -3'
miRNA:   3'- -CUCGGUGUA---CUAGCGCcugUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 55166 0.7 0.447186
Target:  5'- cGGCCGCGaacaucaUGGUCGCGGACGagcagaauuuCCACaCGc -3'
miRNA:   3'- cUCGGUGU-------ACUAGCGCCUGU----------GGUG-GC- -5'
24009 3' -56.3 NC_005262.1 + 51049 0.7 0.44815
Target:  5'- cGGgCACAUcAUCGaCGGGCACCAUCa -3'
miRNA:   3'- cUCgGUGUAcUAGC-GCCUGUGGUGGc -5'
24009 3' -56.3 NC_005262.1 + 11742 0.7 0.457862
Target:  5'- cGGCCAgCGUGcagCGCGacgccGGCGCCGCCGa -3'
miRNA:   3'- cUCGGU-GUACua-GCGC-----CUGUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 19371 0.7 0.467685
Target:  5'- cGAGCCGuCAUGcgCGUagcuggauGGAUGCCGCCc -3'
miRNA:   3'- -CUCGGU-GUACuaGCG--------CCUGUGGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.