miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24009 3' -56.3 NC_005262.1 + 30204 0.68 0.581695
Target:  5'- cAGCgGCAcGAUCGUGGGCuucgcgGCgGCCGg -3'
miRNA:   3'- cUCGgUGUaCUAGCGCCUG------UGgUGGC- -5'
24009 3' -56.3 NC_005262.1 + 57529 0.68 0.603224
Target:  5'- -cGCCGCGgcaucCGCGGACGgUGCCGg -3'
miRNA:   3'- cuCGGUGUacua-GCGCCUGUgGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 43805 0.67 0.614028
Target:  5'- gGAGCUuuCGggcGAUCGCGGcgACACgGCCGc -3'
miRNA:   3'- -CUCGGu-GUa--CUAGCGCC--UGUGgUGGC- -5'
24009 3' -56.3 NC_005262.1 + 20481 0.67 0.624847
Target:  5'- aGAGCgGCgaGUGcguaAUCGCGcGCACCAUCGg -3'
miRNA:   3'- -CUCGgUG--UAC----UAGCGCcUGUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 52352 0.67 0.635673
Target:  5'- -cGCCGgAUGAagGCGGACGggaCGCUGg -3'
miRNA:   3'- cuCGGUgUACUagCGCCUGUg--GUGGC- -5'
24009 3' -56.3 NC_005262.1 + 29251 0.67 0.645414
Target:  5'- cGGCCgccugacGCAUGGUCGC--GCGCCACuCGg -3'
miRNA:   3'- cUCGG-------UGUACUAGCGccUGUGGUG-GC- -5'
24009 3' -56.3 NC_005262.1 + 50291 0.67 0.646496
Target:  5'- cGAGCC-CGUGAcggccgCGCGGAUugaggaGCCgGCCGc -3'
miRNA:   3'- -CUCGGuGUACUa-----GCGCCUG------UGG-UGGC- -5'
24009 3' -56.3 NC_005262.1 + 50431 0.67 0.650822
Target:  5'- aGGGCCGCGUGcacGUCGUcgugccgcgcgaggaGGACgGCCGCaCGg -3'
miRNA:   3'- -CUCGGUGUAC---UAGCG---------------CCUG-UGGUG-GC- -5'
24009 3' -56.3 NC_005262.1 + 51207 0.67 0.656226
Target:  5'- gGAGCCGCGcgggcgaugcUGAUCGCaccGGGCuccucauGCgCGCCGg -3'
miRNA:   3'- -CUCGGUGU----------ACUAGCG---CCUG-------UG-GUGGC- -5'
24009 3' -56.3 NC_005262.1 + 7743 0.67 0.657306
Target:  5'- -uGCCGC----UCGCGGAgauagccguCGCCGCCGg -3'
miRNA:   3'- cuCGGUGuacuAGCGCCU---------GUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 15063 0.67 0.657306
Target:  5'- cGAGCagGCAUGGUCGCuGuAC-CCGCCu -3'
miRNA:   3'- -CUCGg-UGUACUAGCGcC-UGuGGUGGc -5'
24009 3' -56.3 NC_005262.1 + 10792 0.67 0.657306
Target:  5'- cGGCCGCGUGcgCGCGGcCucgAUCugCGc -3'
miRNA:   3'- cUCGGUGUACuaGCGCCuG---UGGugGC- -5'
24009 3' -56.3 NC_005262.1 + 55640 0.66 0.668093
Target:  5'- cGGGCCGCGcGcUCGUGGcCGCguCCGg -3'
miRNA:   3'- -CUCGGUGUaCuAGCGCCuGUGguGGC- -5'
24009 3' -56.3 NC_005262.1 + 41733 0.66 0.678848
Target:  5'- aGAGCCGCAcGA-CGgGGAuCACgACCc -3'
miRNA:   3'- -CUCGGUGUaCUaGCgCCU-GUGgUGGc -5'
24009 3' -56.3 NC_005262.1 + 16417 0.66 0.678848
Target:  5'- cGAGCCAgAgGAUCGCGGcgAUgACCa -3'
miRNA:   3'- -CUCGGUgUaCUAGCGCCugUGgUGGc -5'
24009 3' -56.3 NC_005262.1 + 35488 0.66 0.678848
Target:  5'- cGGGCUggaGCGUGcgCGCGGuauugaGCGCCGCg- -3'
miRNA:   3'- -CUCGG---UGUACuaGCGCC------UGUGGUGgc -5'
24009 3' -56.3 NC_005262.1 + 31274 0.66 0.679922
Target:  5'- cAGCCGCAgucguccgcggccaaGAUCGCGGcgACAaugggucuguCCGCCGa -3'
miRNA:   3'- cUCGGUGUa--------------CUAGCGCC--UGU----------GGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 31369 0.66 0.688492
Target:  5'- -cGCCGCGaucuUGGcCGCGGACgacugcgGCUGCCGa -3'
miRNA:   3'- cuCGGUGU----ACUaGCGCCUG-------UGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 29749 0.66 0.68956
Target:  5'- cGGGCUGCGcGggCGCGGGCggcaugccgcucGCUGCCGa -3'
miRNA:   3'- -CUCGGUGUaCuaGCGCCUG------------UGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 60099 0.66 0.68956
Target:  5'- cGGGCacgaucaACAUGGUCGggcacgaGGGCGCCAgCGu -3'
miRNA:   3'- -CUCGg------UGUACUAGCg------CCUGUGGUgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.