Results 1 - 20 of 75 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 30736 | 0.66 | 0.721333 |
Target: 5'- -uGuCCGCGUuguccGA-CGCGGGCACCuuGCCGa -3' miRNA: 3'- cuC-GGUGUA-----CUaGCGCCUGUGG--UGGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 50963 | 0.66 | 0.721333 |
Target: 5'- cGAGCgCGCcgugcGAUUGCGucGGCACCugCGg -3' miRNA: 3'- -CUCG-GUGua---CUAGCGC--CUGUGGugGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 42566 | 0.66 | 0.721333 |
Target: 5'- cGAGCCGCuucccUCGCucgaauGGaacGCGCCGCCGg -3' miRNA: 3'- -CUCGGUGuacu-AGCG------CC---UGUGGUGGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 19048 | 0.66 | 0.721333 |
Target: 5'- --uCCACAUgucGAUUGCGaggcccuuGACGCCGCCGc -3' miRNA: 3'- cucGGUGUA---CUAGCGC--------CUGUGGUGGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 10512 | 0.66 | 0.721333 |
Target: 5'- cGGCCAgCAgcagCGCGGGgGCgGCCGa -3' miRNA: 3'- cUCGGU-GUacuaGCGCCUgUGgUGGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 27621 | 0.66 | 0.721333 |
Target: 5'- uGAGCuCGCccucgucgGUGcgCGCGGGCACgaGCUGg -3' miRNA: 3'- -CUCG-GUG--------UACuaGCGCCUGUGg-UGGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 49592 | 0.66 | 0.721333 |
Target: 5'- aGGCCcuCGgcGAUCGCGcugcgcGCACCGCCGg -3' miRNA: 3'- cUCGGu-GUa-CUAGCGCc-----UGUGGUGGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 40395 | 0.66 | 0.710813 |
Target: 5'- -uGCCGCGUucgCGCGGAUucaGCCGCgCGu -3' miRNA: 3'- cuCGGUGUAcuaGCGCCUG---UGGUG-GC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 22582 | 0.66 | 0.700219 |
Target: 5'- cGGCCGCAUG--CGCGG-CGCUGCUc -3' miRNA: 3'- cUCGGUGUACuaGCGCCuGUGGUGGc -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 13070 | 0.66 | 0.700219 |
Target: 5'- -cGUCACGcgcgGGUCGCGGucgucgACGCCgaGCCGg -3' miRNA: 3'- cuCGGUGUa---CUAGCGCC------UGUGG--UGGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 23793 | 0.66 | 0.700219 |
Target: 5'- -cGCCGCGUGGUCGaccgugcgcCGGuagacccacacGCGCCGCuCGg -3' miRNA: 3'- cuCGGUGUACUAGC---------GCC-----------UGUGGUG-GC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 45206 | 0.66 | 0.700219 |
Target: 5'- uGGCgCGCgGUGuUCGCGGcAC-CCGCCGa -3' miRNA: 3'- cUCG-GUG-UACuAGCGCC-UGuGGUGGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 34019 | 0.66 | 0.700219 |
Target: 5'- -uGCCGCGUGcccgcCGCGaGcucgaGCACCGCCGc -3' miRNA: 3'- cuCGGUGUACua---GCGC-C-----UGUGGUGGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 12249 | 0.66 | 0.700219 |
Target: 5'- cGGUCGCGUcGAUgGuCGGGCACCugucgaucgcgGCCGg -3' miRNA: 3'- cUCGGUGUA-CUAgC-GCCUGUGG-----------UGGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 29749 | 0.66 | 0.68956 |
Target: 5'- cGGGCUGCGcGggCGCGGGCggcaugccgcucGCUGCCGa -3' miRNA: 3'- -CUCGGUGUaCuaGCGCCUG------------UGGUGGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 41968 | 0.66 | 0.68956 |
Target: 5'- -uGCCGCGccuGUUGCcuGACACCGCCGc -3' miRNA: 3'- cuCGGUGUac-UAGCGc-CUGUGGUGGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 60099 | 0.66 | 0.68956 |
Target: 5'- cGGGCacgaucaACAUGGUCGggcacgaGGGCGCCAgCGu -3' miRNA: 3'- -CUCGg------UGUACUAGCg------CCUGUGGUgGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 31369 | 0.66 | 0.688492 |
Target: 5'- -cGCCGCGaucuUGGcCGCGGACgacugcgGCUGCCGa -3' miRNA: 3'- cuCGGUGU----ACUaGCGCCUG-------UGGUGGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 31274 | 0.66 | 0.679922 |
Target: 5'- cAGCCGCAgucguccgcggccaaGAUCGCGGcgACAaugggucuguCCGCCGa -3' miRNA: 3'- cUCGGUGUa--------------CUAGCGCC--UGU----------GGUGGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 41733 | 0.66 | 0.678848 |
Target: 5'- aGAGCCGCAcGA-CGgGGAuCACgACCc -3' miRNA: 3'- -CUCGGUGUaCUaGCgCCU-GUGgUGGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home