Results 21 - 40 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 41733 | 0.66 | 0.678848 |
Target: 5'- aGAGCCGCAcGA-CGgGGAuCACgACCc -3' miRNA: 3'- -CUCGGUGUaCUaGCgCCU-GUGgUGGc -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 16417 | 0.66 | 0.678848 |
Target: 5'- cGAGCCAgAgGAUCGCGGcgAUgACCa -3' miRNA: 3'- -CUCGGUgUaCUAGCGCCugUGgUGGc -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 55640 | 0.66 | 0.668093 |
Target: 5'- cGGGCCGCGcGcUCGUGGcCGCguCCGg -3' miRNA: 3'- -CUCGGUGUaCuAGCGCCuGUGguGGC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 10792 | 0.67 | 0.657306 |
Target: 5'- cGGCCGCGUGcgCGCGGcCucgAUCugCGc -3' miRNA: 3'- cUCGGUGUACuaGCGCCuG---UGGugGC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 7743 | 0.67 | 0.657306 |
Target: 5'- -uGCCGC----UCGCGGAgauagccguCGCCGCCGg -3' miRNA: 3'- cuCGGUGuacuAGCGCCU---------GUGGUGGC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 15063 | 0.67 | 0.657306 |
Target: 5'- cGAGCagGCAUGGUCGCuGuAC-CCGCCu -3' miRNA: 3'- -CUCGg-UGUACUAGCGcC-UGuGGUGGc -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 51207 | 0.67 | 0.656226 |
Target: 5'- gGAGCCGCGcgggcgaugcUGAUCGCaccGGGCuccucauGCgCGCCGg -3' miRNA: 3'- -CUCGGUGU----------ACUAGCG---CCUG-------UG-GUGGC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 50431 | 0.67 | 0.650822 |
Target: 5'- aGGGCCGCGUGcacGUCGUcgugccgcgcgaggaGGACgGCCGCaCGg -3' miRNA: 3'- -CUCGGUGUAC---UAGCG---------------CCUG-UGGUG-GC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 50291 | 0.67 | 0.646496 |
Target: 5'- cGAGCC-CGUGAcggccgCGCGGAUugaggaGCCgGCCGc -3' miRNA: 3'- -CUCGGuGUACUa-----GCGCCUG------UGG-UGGC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 29251 | 0.67 | 0.645414 |
Target: 5'- cGGCCgccugacGCAUGGUCGC--GCGCCACuCGg -3' miRNA: 3'- cUCGG-------UGUACUAGCGccUGUGGUG-GC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 52352 | 0.67 | 0.635673 |
Target: 5'- -cGCCGgAUGAagGCGGACGggaCGCUGg -3' miRNA: 3'- cuCGGUgUACUagCGCCUGUg--GUGGC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 20481 | 0.67 | 0.624847 |
Target: 5'- aGAGCgGCgaGUGcguaAUCGCGcGCACCAUCGg -3' miRNA: 3'- -CUCGgUG--UAC----UAGCGCcUGUGGUGGC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 43805 | 0.67 | 0.614028 |
Target: 5'- gGAGCUuuCGggcGAUCGCGGcgACACgGCCGc -3' miRNA: 3'- -CUCGGu-GUa--CUAGCGCC--UGUGgUGGC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 57529 | 0.68 | 0.603224 |
Target: 5'- -cGCCGCGgcaucCGCGGACGgUGCCGg -3' miRNA: 3'- cuCGGUGUacua-GCGCCUGUgGUGGC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 30204 | 0.68 | 0.581695 |
Target: 5'- cAGCgGCAcGAUCGUGGGCuucgcgGCgGCCGg -3' miRNA: 3'- cUCGgUGUaCUAGCGCCUG------UGgUGGC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 2075 | 0.68 | 0.581695 |
Target: 5'- -uGCgCACAUGGUCGCuuccggGGGCAUgGCCc -3' miRNA: 3'- cuCG-GUGUACUAGCG------CCUGUGgUGGc -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 33019 | 0.68 | 0.575265 |
Target: 5'- gGAGCgAuCGUGAaggcgcuggcgagcgUCGCGcgugcGACGCCGCCGg -3' miRNA: 3'- -CUCGgU-GUACU---------------AGCGC-----CUGUGGUGGC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 45078 | 0.68 | 0.570988 |
Target: 5'- -cGCCGCcUGccgCGCGGACugCugCa -3' miRNA: 3'- cuCGGUGuACua-GCGCCUGugGugGc -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 49328 | 0.68 | 0.570988 |
Target: 5'- uGGUCGCGgaccucGcgCGCGGACugcgcGCCGCCGa -3' miRNA: 3'- cUCGGUGUa-----CuaGCGCCUG-----UGGUGGC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 62280 | 0.68 | 0.560328 |
Target: 5'- -uGCCugAUGAUgaaagcCGCGGGCGCgGCUu -3' miRNA: 3'- cuCGGugUACUA------GCGCCUGUGgUGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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