miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24009 3' -56.3 NC_005262.1 + 2075 0.68 0.581695
Target:  5'- -uGCgCACAUGGUCGCuuccggGGGCAUgGCCc -3'
miRNA:   3'- cuCG-GUGUACUAGCG------CCUGUGgUGGc -5'
24009 3' -56.3 NC_005262.1 + 5177 0.71 0.39241
Target:  5'- cGGCCgGCGUcgcGggCGCGGGCGCgGCCGg -3'
miRNA:   3'- cUCGG-UGUA---CuaGCGCCUGUGgUGGC- -5'
24009 3' -56.3 NC_005262.1 + 6973 0.69 0.539184
Target:  5'- cGGCUcgaaaACGcGAUCGCGGccgGCAUCGCCGa -3'
miRNA:   3'- cUCGG-----UGUaCUAGCGCC---UGUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 7743 0.67 0.657306
Target:  5'- -uGCCGC----UCGCGGAgauagccguCGCCGCCGg -3'
miRNA:   3'- cuCGGUGuacuAGCGCCU---------GUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 9005 0.76 0.20691
Target:  5'- cGGCCGCAUGAUaggGCGGACGCacgaACCc -3'
miRNA:   3'- cUCGGUGUACUAg--CGCCUGUGg---UGGc -5'
24009 3' -56.3 NC_005262.1 + 10512 0.66 0.721333
Target:  5'- cGGCCAgCAgcagCGCGGGgGCgGCCGa -3'
miRNA:   3'- cUCGGU-GUacuaGCGCCUgUGgUGGC- -5'
24009 3' -56.3 NC_005262.1 + 10792 0.67 0.657306
Target:  5'- cGGCCGCGUGcgCGCGGcCucgAUCugCGc -3'
miRNA:   3'- cUCGGUGUACuaGCGCCuG---UGGugGC- -5'
24009 3' -56.3 NC_005262.1 + 10856 0.69 0.543393
Target:  5'- gGGGCgGCAUGAgugagggCGCGGuaaugggugccacggGCACCAUCa -3'
miRNA:   3'- -CUCGgUGUACUa------GCGCC---------------UGUGGUGGc -5'
24009 3' -56.3 NC_005262.1 + 11189 0.76 0.20156
Target:  5'- -cGCCGcCGUGAUCGUGcGCGCCACCu -3'
miRNA:   3'- cuCGGU-GUACUAGCGCcUGUGGUGGc -5'
24009 3' -56.3 NC_005262.1 + 11742 0.7 0.457862
Target:  5'- cGGCCAgCGUGcagCGCGacgccGGCGCCGCCGa -3'
miRNA:   3'- cUCGGU-GUACua-GCGC-----CUGUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 12249 0.66 0.700219
Target:  5'- cGGUCGCGUcGAUgGuCGGGCACCugucgaucgcgGCCGg -3'
miRNA:   3'- cUCGGUGUA-CUAgC-GCCUGUGG-----------UGGC- -5'
24009 3' -56.3 NC_005262.1 + 13070 0.66 0.700219
Target:  5'- -cGUCACGcgcgGGUCGCGGucgucgACGCCgaGCCGg -3'
miRNA:   3'- cuCGGUGUa---CUAGCGCC------UGUGG--UGGC- -5'
24009 3' -56.3 NC_005262.1 + 15063 0.67 0.657306
Target:  5'- cGAGCagGCAUGGUCGCuGuAC-CCGCCu -3'
miRNA:   3'- -CUCGg-UGUACUAGCGcC-UGuGGUGGc -5'
24009 3' -56.3 NC_005262.1 + 15897 0.71 0.429076
Target:  5'- -cGCCGCGUGcgCGCGacguGGCGCCGCg- -3'
miRNA:   3'- cuCGGUGUACuaGCGC----CUGUGGUGgc -5'
24009 3' -56.3 NC_005262.1 + 16417 0.66 0.678848
Target:  5'- cGAGCCAgAgGAUCGCGGcgAUgACCa -3'
miRNA:   3'- -CUCGGUgUaCUAGCGCCugUGgUGGc -5'
24009 3' -56.3 NC_005262.1 + 19048 0.66 0.721333
Target:  5'- --uCCACAUgucGAUUGCGaggcccuuGACGCCGCCGc -3'
miRNA:   3'- cucGGUGUA---CUAGCGC--------CUGUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 19371 0.7 0.467685
Target:  5'- cGAGCCGuCAUGcgCGUagcuggauGGAUGCCGCCc -3'
miRNA:   3'- -CUCGGU-GUACuaGCG--------CCUGUGGUGGc -5'
24009 3' -56.3 NC_005262.1 + 20481 0.67 0.624847
Target:  5'- aGAGCgGCgaGUGcguaAUCGCGcGCACCAUCGg -3'
miRNA:   3'- -CUCGgUG--UAC----UAGCGCcUGUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 22582 0.66 0.700219
Target:  5'- cGGCCGCAUG--CGCGG-CGCUGCUc -3'
miRNA:   3'- cUCGGUGUACuaGCGCCuGUGGUGGc -5'
24009 3' -56.3 NC_005262.1 + 22894 0.71 0.41972
Target:  5'- aGAGCaCGCAUccucGAUCGCGGaagacugcuacGCGCuCGCCGa -3'
miRNA:   3'- -CUCG-GUGUA----CUAGCGCC-----------UGUG-GUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.